Stem-loop osa-MIR1875

Accession

MI0008278

Description

Oryza sativa osa-MIR1875 precursor miRNA

Literature search

1 open access papers mention osa-MIR1875
(1 sentences)

Sequence

29964 reads, 120.0 reads per million, 142 experiments

gcuguccauuuucAUUGCACUUUGCUCCAUUGUGGUAuugacauucugcaagaacgagucccaguaucaagucacuguuacgguguuguugguaccauugauuaacauaacacuugacggccauacuuggucauguuguauguuaucagcuucacagagguacauguggcacuuuaacaguuauuugauacagugacuaggcugcaguugagcgaaaccACAAUGGAGUGAAGUGCAACAGAAaugaacauu
..(((.((((((..((((((((((((((((((((((.(((.....(((((.(....((((.(.(((((((((.(((((((.(((((((...(((((.(((......((((((..(((((((((....)))))..))))..))))))........))).)))))...))))))).))))))).))))))))).).))))...)))))).....))).))))))))))))))))))))))..)))))).)))..

Structure

gc   c      cA                      A   acauu     a aacg    c a         c       c       uug     a   --auuaac      cu    --     u 
  ugu cauuuu  UUGCACUUUGCUCCAUUGUGGU uug     cugca g    aguc c guaucaagu acuguua gguguug   guacc uug        auaaca  ugac  ggcca a
  ||| ||||||  |||||||||||||||||||||| |||     ||||| |    |||| | ||||||||| ||||||| |||||||   ||||| |||        ||||||  ||||  |||||  
  aca guaAAG  AACGUGAAGUGAGGUAACAcca agc     gacgu c    ucag g cauaguuua ugacaau ucacggu   caugg gac        uauugu  guug  cuggu c
uu   a      AC                      a   gaguu     - -gga    u a         u       u       gua     a   acuucgac      au    ua     u 

Annotation confidence Medium

Genome context

9: 17567947-17568198 [-]

Mature osa-miR1875-5p

• Accession: MIMAT0056077
• Description: Oryza sativa osa-miR1875-5p mature miRNA
• Sequence: 14 - AUUGCACUUUGCUCCAUUGUGGUA - 37
• Evidence: experimental ; unknown

Mature osa-miR1875-3p

• Accession: MIMAT0007829
• Description: Oryza sativa osa-miR1875-3p mature miRNA
• Sequence: 220 - ACAAUGGAGUGAAGUGCAACAGAA - 243
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18687877
   A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
   "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
   "Genome Res (2008) 18:1456-1465