Stem-loop osa-MIR1862d

Accession

MI0008279

Description

Oryza sativa osa-MIR1862d precursor miRNA

Literature search

15 open access papers mention osa-MIR1862d
(24 sentences)

Sequence

1237879 reads, 6045.0 reads per million, 142 experiments

cuacuggcuagucucguagcuugcuagguacucccucugUCCCAAAAUAAACAAAGCUAGUACggggauguggcacuuccuaguccuguACUAGGUUUGUUUAUUUUGGGACGgagggaguaucauaguuuguuacuccucugguuacua
....(((((((....(((((..(((((((((((((((((((((((((((((((((.((((((((((.((..((.....))..)))))))))))).))))))))))))))))))))))))))))).))))..)))))....)))))))...

Structure

cuac       ucuc     uu    -                             G          g  gu  c 
    uggcuag    guagc  gcua gguacucccucugUCCCAAAAUAAACAAA CUAGUACggg au  gg a
    |||||||    |||||  |||| ||||||||||||||||||||||||||||| |||||||||| ||  || c
    auugguc    cauug  ugau cuaugagggagGCAGGGUUUUAUUUGUUU GAUCAugucc ug  cc u
-auc       uccu     uu    a                             G          -  au  u 

Annotation confidence High

Genome context

10: 4833611-4833760 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from osa-MIR1862d

Mature osa-miR1862d-5p

• Accession: MIMAT0056078
• Description: Oryza sativa osa-miR1862d-5p mature miRNA
• Sequence: 40 - UCCCAAAAUAAACAAAGCUAGUAC - 63
• Evidence: experimental ; unknown

Mature osa-miR1862d-3p

• Accession: MIMAT0007830
• Description: Oryza sativa osa-miR1862d-3p mature miRNA
• Sequence: 90 - ACUAGGUUUGUUUAUUUUGGGACG - 113
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18687877
   A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
   "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
   "Genome Res (2008) 18:1456-1465