Stem-loop osa-MIR1876

Accession

MI0008280

Description

Oryza sativa osa-MIR1876 precursor miRNA

Literature search

7 open access papers mention osa-MIR1876
(13 sentences)

Sequence

235 reads, 163 reads per million, 2 experiments

ggcacauauguugguauucuauuggaaugcaagugggcuggcuuuugaacccauuuaugggcuauucaaguggguaaaccauagguuggugcacuuaaauggccuAUAAGUGGGUUUGUGGGCUGGCCCucuuguauccugauaguuuaguaugauu
...........((.((..(((((((.(((((((.((((((((((.(((((((((((((((((((((.(((((.(..((((...))))..).))))).))))))))))))))))))))).)))))))))).))))))).)))))))..)).)).....

Structure

ggcacauaugu  g  uu       a       u          u                     c     g ua    a 
           ug ua  cuauugg augcaag gggcuggcuu ugaacccauuuaugggcuauu aagug g  aacc  
           || ||  ||||||| ||||||| |||||||||| ||||||||||||||||||||| ||||| |  |||| u
           au au  gauaguc uauguuc CCCGGUCGGG GUUUGGGUGAAUAuccgguaa uucac u  uugg  
------uuagu  g  uu       c       u          U                     a     g gg    a 

Annotation confidence Not enough data

Genome context

Chr10: 4833365-4833521 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from osa-MIR1876

Mature osa-miR1876

• Accession: MIMAT0007831
• Description: Oryza sativa osa-miR1876 mature miRNA
• Sequence: 106 - AUAAGUGGGUUUGUGGGCUGGCCC - 129
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18687877
   A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
   "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
   "Genome Res (2008) 18:1456-1465