Stem-loop osa-MIR1876

Accession

MI0008280

Description

Oryza sativa osa-MIR1876 precursor miRNA

Literature search

8 open access papers mention osa-MIR1876
(17 sentences)

Sequence

326046 reads, 2370.0 reads per million, 142 experiments

ggcacauauguugguauucuauuggaaugcaaguggGCUGGCUUUUGAACCCAUUUAUGGgcuauucaaguggguaaaccauagguuggugcacuuaaauggccuAUAAGUGGGUUUGUGGGCUGGCCCucuuguauccugauaguuuaguaugauu
...........((.((..(((((((.(((((((.((((((((((.(((((((((((((((((((((.(((((.(..((((...))))..).))))).))))))))))))))))))))).)))))))))).))))))).)))))))..)).)).....

Structure

ggcacauaugu  g  uu       a       u          U                     c     g ua    a 
           ug ua  cuauugg augcaag ggGCUGGCUU UGAACCCAUUUAUGGgcuauu aagug g  aacc  
           || ||  ||||||| ||||||| |||||||||| ||||||||||||||||||||| ||||| |  |||| u
           au au  gauaguc uauguuc CCCGGUCGGG GUUUGGGUGAAUAuccgguaa uucac u  uugg  
------uuagu  g  uu       c       u          U                     a     g gg    a 

Annotation confidence High

Genome context

10: 4833365-4833521 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from osa-MIR1876

Mature osa-miR1876-5p

• Accession: MIMAT0056079
• Description: Oryza sativa osa-miR1876-5p mature miRNA
• Sequence: 37 - GCUGGCUUUUGAACCCAUUUAUGG - 60
• Evidence: experimental ; unknown

Mature osa-miR1876-3p

• Accession: MIMAT0007831
• Description: Oryza sativa osa-miR1876-3p mature miRNA
• Sequence: 106 - AUAAGUGGGUUUGUGGGCUGGCCC - 129
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18687877
   A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
   "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
   "Genome Res (2008) 18:1456-1465