Stem-loop osa-MIR1862e

Accession

MI0008282

Description

Oryza sativa osa-MIR1862e precursor miRNA

Literature search

12 open access papers mention osa-MIR1862e
(17 sentences)

Sequence

346979 reads, 1658.0 reads per million, 142 experiments

uauuuccuucAUCCCAAAAUGAAAAAAUCUAGUACauuauguguuugacauauccuguaCUAGAUUUGUUUAUUUUGGGACGGAgggaguauc
((((((((((.((((((((((((.((((((((((((..((((((...))))))..)))))))))))).)))))))))))).))))))))))..

Structure

--          A            A            uu      u 
  uauuuccuuc UCCCAAAAUGAA AAAUCUAGUACa  augugu  
  |||||||||| |||||||||||| ||||||||||||  |||||| u
  augagggAGG AGGGUUUUAUUU UUUAGAUCaugu  uauaca  
cu          C            G            cc      g 

Annotation confidence Medium

Genome context

11: 2523232-2523324 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from osa-MIR1862e

Mature osa-miR1862e-5p

• Accession: MIMAT0056080
• Description: Oryza sativa osa-miR1862e-5p mature miRNA
• Sequence: 11 - AUCCCAAAAUGAAAAAAUCUAGUAC - 35
• Evidence: experimental ; unknown

Mature osa-miR1862e-3p

• Accession: MIMAT0007833
• Description: Oryza sativa osa-miR1862e-3p mature miRNA
• Sequence: 60 - CUAGAUUUGUUUAUUUUGGGACGGA - 84
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18687877
   A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
   "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
   "Genome Res (2008) 18:1456-1465