Stem-loop osa-MIR1877

Accession

MI0008283

Description

Oryza sativa osa-MIR1877 precursor miRNA

Literature search

2 open access papers mention osa-MIR1877
(7 sentences)

Sequence

4 reads, 3 reads per million, 2 experiments

auucuaaacucucgaggggacauucucucauugcuugcaugucauccaaauguuuaugaaaaaauuaaaaaaaaucaacuggauagauuaauaugugauagauaacuucauaaacaugcaaguuaaaauuaaacuucuacaaguugcaaaaaacuacaacuaaucuaucacauauuaaucuauuuuauuauuuuuuuaaaaaaaauauaaccauuuAGAUGACAUGUGAAUGAUGAGGGGauguccucuagagcuuagaau
(((((((.((((..(((((((((((((((((((.((((((((((((.(((((.(((((......(((((((((.......(((((((((((((((((((((((((((((((....))).))))).................(((((..........))))).))))))))))))))))))))))).....)))))))))......))))).))))).)))))))))))).))))))))))))))))))))))).)))))))

Structure

       a    cg                   c            c     u     aaaaaa         aucaacu                       --------------------------------------     -   a 
auucuaa cucu  aggggacauucucucauug uugcaugucauc aaaug uuaug      uuaaaaaaa       ggauagauuaauaugugauagau                                      aacuu cau a
||||||| ||||  ||||||||||||||||||| |||||||||||| ||||| |||||      |||||||||       |||||||||||||||||||||||                                      ||||| |||  
uaagauu gaga  ucuccuguaGGGGAGUAGU AGUGUACAGUAG uuuac aauau      aauuuuuuu       uuuaucuaauuauacacuaucua                                      uugaa gua a
       c    --                   A            A     c     aaaaaa         --auuau                       aucaacaucaaaaaacguugaacaucuucaaauuaaaa     c   c 

Annotation confidence Not enough data

Genome context

Chr9: 21043873-21044133 [+]

Mature osa-miR1877

• Accession: MIMAT0007834
• Description: Oryza sativa osa-miR1877 mature miRNA
• Sequence: 217 - AGAUGACAUGUGAAUGAUGAGGGG - 240
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18687877
   A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
   "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
   "Genome Res (2008) 18:1456-1465