Stem-loop osa-MIR1878

Accession

MI0008284

Description

Oryza sativa osa-MIR1878 precursor miRNA

Literature search

1 open access papers mention osa-MIR1878
(3 sentences)

Sequence

59 reads, 41 reads per million, 2 experiments

accacugcagACUUAAUCUGGACACUAUAAAAGAaaauugugcaugugaaaauaugcccauuauaaauuuguaguguucagauugaguuuagaaugguug
((((.(..(((((((((((((((((((((((.......((.((((((....)))))).)).......)))))))))))))))))))))))..).))))..

Structure

--    c gc                       AGAaaau  u      g 
  acca u  agACUUAAUCUGGACACUAUAAA       ug gcaugu a
  |||| |  |||||||||||||||||||||||       || ||||||  
  uggu a  uuugaguuagacuugugauguuu       ac cguaua a
gu    a ga                       aaauauu  c      a 

Annotation confidence Not enough data

Genome context

Chr9: 16555509-16555608 [+]

Mature osa-miR1878

• Accession: MIMAT0007835
• Description: Oryza sativa osa-miR1878 mature miRNA
• Sequence: 11 - ACUUAAUCUGGACACUAUAAAAGA - 34
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18687877
   A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
   "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
   "Genome Res (2008) 18:1456-1465