Stem-loop osa-MIR1878

Accession

MI0008284

Description

Oryza sativa osa-MIR1878 precursor miRNA

Literature search

1 open access papers mention osa-MIR1878
(3 sentences)

Sequence

156479 reads, 662.0 reads per million, 139 experiments

accacugcagACUUAAUCUGGACACUAUAAAAGAaaauugugcaugugaaaauaugcccauuauaaAUUUGUAGUGUUCAGAUUGAGUUuagaaugguug
((((.(..(((((((((((((((((((((((.......((.((((((....)))))).)).......)))))))))))))))))))))))..).))))..

Structure

--    c gc                       AGAaaau  u      g 
  acca u  agACUUAAUCUGGACACUAUAAA       ug gcaugu a
  |||| |  |||||||||||||||||||||||       || ||||||  
  uggu a  uUUGAGUUAGACUUGUGAUGUUU       ac cguaua a
gu    a ga                       Aaauauu  c      a 

Annotation confidence High

Genome context

9: 16555509-16555608 [+]

Mature osa-miR1878-5p

• Accession: MIMAT0007835
• Description: Oryza sativa osa-miR1878-5p mature miRNA
• Sequence: 11 - ACUUAAUCUGGACACUAUAAAAGA - 34
• Evidence: experimental ; 454 [1]

Mature osa-miR1878-3p

• Accession: MIMAT0056082
• Description: Oryza sativa osa-miR1878-3p mature miRNA
• Sequence: 67 - AUUUGUAGUGUUCAGAUUGAGUU - 89
• Evidence: experimental ; unknown

References

1. PubMed ID: 18687877
   A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
   "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
   "Genome Res (2008) 18:1456-1465