Stem-loop osa-MIR1879

Accession

MI0008285

Description

Oryza sativa osa-MIR1879 precursor miRNA

Literature search

3 open access papers mention osa-MIR1879
(5 sentences)

Sequence

62374 reads, 208.0 reads per million, 142 experiments

uccaacccaucccACCUCGUCCCCAAACCAAACACAUgcacgcaaauggcuuguugaggaauaaacaucuugcucccuugcauucuaaacuaugauauucuucaagcauauGUGUUUGGUUUAGGGAUGAGGUGGgauggguuaggucca
.((((((((((((((((((((((.(((((((((((((((..((.....))...((((((((((..(((..(((......))).........))).)))))))))))))..)))))))))))).)))))))))))))))))))).))....

Structure

---u  -                    C            --   acgcaaauggcuug          aa   -------cu   uc 
    cc aacccaucccACCUCGUCCC AAACCAAACACA  Ugc              uugaggaaua  cau         ugc  c
    || |||||||||||||||||||| ||||||||||||  |||              ||||||||||  |||         |||   
    gg uuggguagGGUGGAGUAGGG UUUGGUUUGUGu  acg              aacuucuuau  gua         acg  c
accu  a                    A            au   --------------          -a   ucaaaucuu   uu 

Annotation confidence High

Genome context

10: 5635320-5635469 [+]

Mature osa-miR1879-5p

• Accession: MIMAT0056083
• Description: Oryza sativa osa-miR1879-5p mature miRNA
• Sequence: 14 - ACCUCGUCCCCAAACCAAACACAU - 37
• Evidence: experimental ; unknown

Mature osa-miR1879-3p

• Accession: MIMAT0007836
• Description: Oryza sativa osa-miR1879-3p mature miRNA
• Sequence: 112 - GUGUUUGGUUUAGGGAUGAGGUGG - 135
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18687877
   A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
   "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
   "Genome Res (2008) 18:1456-1465