Stem-loop osa-MIR1881

Accession

MI0008287

Description

Oryza sativa osa-MIR1881 precursor miRNA

Literature search

2 open access papers mention osa-MIR1881
(2 sentences)

Sequence

33398 reads, 150.0 reads per million, 140 experiments

aaccaaguuaaaaugcucauagguaugaacaagcaucAAUGUUAUUGUAGCGUGGUGGUGUgaccucugugcacguaagcuugaggcagcaaguucgacuccuucaaaaggaagauuuguaccgcuggggaagugccagaagaaaagaacaaggaagacuugcuagcaggacaaaaggacgguaaacuuggaaaaaaaaagguccagaagaaaagaacaaagaagaacugcuugAAGGAGUCGAACUUGCUACCUCAAgcuugcgugcacauaggucacaccacuacgcuacaauaacguugaugcuuguucagaccugugagcauuuuaacuugguu
((((((((((((((((((((((((.(((((((((((((((((((((((((((((((((((((((((.(((((((((((((((((((.((((((((((((((((((((..((....(((((.(((((((..((((.((...............))...)))).))))).))))))).((((.....................))))......................))..)))))))))))))))))))).))))))))))))))))))).))))))))))))))))))))))))))))))))))))))))).))))))))))))))))))))))))

Structure

                        a                                         c                   c                    aa  ------------------------------------------------aaga     a  -     gg    --g  agaaga 
aaccaaguuaaaaugcucauaggu ugaacaagcaucAAUGUUAUUGUAGCGUGGUGGUGUgaccu ugugcacguaagcuugagg agcaaguucgacuccuucaa  gg                                                    uuugu cc gcugg  aagu   cc      a
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||  ||                                                    ||||| || |||||  ||||   ||      a
uugguucaauuuuacgagugucca acuuguucguaguugcaauaacaucgcaucaccacacugga acacgugcguucgAACUCC UCGUUCAAGCUGAGGAAguu  uc                                                    aaaca gg cgauc  uuca   gg      a
                        g                                         u                   A                    cg  aagaagaaacaagaaaagaagaccuggaaaaaaaaagguucaaauggcagga     -  a     -g    gaa  aacaag 

Annotation confidence Low

Genome context

12: 5725922-5726259 [+]

Mature osa-miR1881-5p

• Accession: MIMAT0007838
• Description: Oryza sativa osa-miR1881-5p mature miRNA
• Sequence: 38 - AAUGUUAUUGUAGCGUGGUGGUGU - 61
• Evidence: experimental ; 454 [1]

Mature osa-miR1881-3p

• Accession: MIMAT0056085
• Description: Oryza sativa osa-miR1881-3p mature miRNA
• Sequence: 235 - AAGGAGUCGAACUUGCUACCUCAA - 258
• Evidence: experimental ; unknown

References

1. PubMed ID: 18687877
   A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
   "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
   "Genome Res (2008) 18:1456-1465