Stem-loop osa-MIR1882b

Accession

MI0008289

Description

Oryza sativa osa-MIR1882b precursor miRNA

Sequence

60254 reads, 232.0 reads per million, 115 experiments

uguuaucguuaccaauauccuAGAUUGCUUUCAAGGUCAUUUCUUuauggaaccccauucccauaaauuuauuauccaaagaugguugcuguaucuaugggaauaaggguuccauaauGAAAUGAUCUUGGACGCAAUCUAGgaguuugcugaugauaac
.((((((((((.(((..(((((((((((.((((((((((((((.(((((((((((.(((((((((.((.((.((.(((....))).)).)).)).)))))))))..))))))))))).)))))))))))))).)))))))))))..))).))))))))))

Structure

u          c   ua           U              U           -c         a  u  u  u   a 
 guuaucguua caa  uccuAGAUUGC UUCAAGGUCAUUUC Uuauggaaccc  auucccaua au ua ua cca a
 |||||||||| |||  ||||||||||| |||||||||||||| |||||||||||  ||||||||| || || || |||  
 caauaguagu guu  agGAUCUAACG AGGUUCUAGUAAAG aauaccuuggg  uaaggguau ua gu gu ggu g
-          c   ug           C              u           aa         c  u  c  u   a 

Annotation confidence Medium

Genome context

8: 9847248-9847407 [+]

Mature osa-miR1882b-5p

• Accession: MIMAT0007840
• Description: Oryza sativa osa-miR1882b-5p mature miRNA
• Sequence: 22 - AGAUUGCUUUCAAGGUCAUUUCUU - 45
• Evidence: experimental ; 454 [1]

Mature osa-miR1882b-3p

• Accession: MIMAT0056087
• Description: Oryza sativa osa-miR1882b-3p mature miRNA
• Sequence: 119 - GAAAUGAUCUUGGACGCAAUCUAG - 142
• Evidence: experimental ; unknown

References

1. PubMed ID: 18687877
   A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
   "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
   "Genome Res (2008) 18:1456-1465