miRBase entry: osa-MIR1882c

Stem-loop osa-MIR1882c


Accession
MI0008290
Description
Oryza sativa osa-MIR1882c precursor miRNA


Sequence

37466 reads, 161.0 reads per million, 106 experiments
uauccuAGAUUGCUUUCAAGGUCAUUUCUUuagggaaccccauucccauaaauucaguauccaaagcugguuguuguaucuaugggaaaggguucccuaacGAAAUGAUCUUGGACGCAAUCUAGgaguu
..(((((((((((.((((((((((((((.(((((((((((..((((((((.((.(((((.(((....))).))))).)).)))))))).))))))))))).)))))))))))))).)))))))))))...

Structure
-ua           U              U           ca        a  u     u   a 
   uccuAGAUUGC UUCAAGGUCAUUUC Uuagggaaccc  uucccaua au cagua cca a
   ||||||||||| |||||||||||||| |||||||||||  |||||||| || ||||| |||  
   agGAUCUAACG AGGUUCUAGUAAAG aaucccuuggg  aaggguau ua guugu ggu g
uug           C              c           -a        c  u     u   c 


Annotation confidence Medium
Do you think this miRNA is real?

Genome context
7: 9122411-9122540 [+]

Database links

Mature osa-miR1882c-5p

Accession MIMAT0007841
Description Oryza sativa osa-miR1882c-5p mature miRNA
Sequence 7 - AGAUUGCUUUCAAGGUCAUUUCUU - 30
Evidence experimental
454 [1]

Mature osa-miR1882c-3p

Accession MIMAT0056088
Description Oryza sativa osa-miR1882c-3p mature miRNA
Sequence 102 - GAAAUGAUCUUGGACGCAAUCUAG - 125
Evidence experimental
unknown

References

  1. PubMed ID: 18687877
    A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
    "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
    "Genome Res (2008) 18:1456-1465