Stem-loop osa-MIR1882f

Accession

MI0008293

Description

Oryza sativa osa-MIR1882f precursor miRNA

Sequence

63439 reads, 256.0 reads per million, 109 experiments

uguuaucguuaccaauauccuAGAUUGCUUUCAAGGUCAUUUCUUuagggaaccccauucccauaaauucaguauccaaagcugguugcuguaucuaugggaauaaggguuccuaacGAAAUGAUCUUGGAUGCAAUCUuggauuuugcggacgauaacg
.(((((((((.((((.((((.(((((((.((((((((((((((.(((((.(((((.(((((((((.((.(((((.(((....))).))))).)).)))))))))..)))))))))).)))))))))))))).))))))).)))).))).)))))))))).

Structure

u         a -   u    u       U              U     g     -c         a  u     u   a 
 guuaucguu c caa aucc AGAUUGC UUCAAGGUCAUUUC Uuagg aaccc  auucccaua au cagua cca a
 ||||||||| | ||| |||| ||||||| |||||||||||||| ||||| |||||  ||||||||| || ||||| |||  
 caauagcag g guu uagg UCUAACG AGGUUCUAGUAAAG aaucc uuggg  uaaggguau ua gucgu ggu g
g         - c   u    u       U              c     -     aa         c  u     u   c 

Annotation confidence High

Genome context

11: 11073482-11073641 [+]

Mature osa-miR1882f-5p

• Accession: MIMAT0007844
• Description: Oryza sativa osa-miR1882f-5p mature miRNA
• Sequence: 22 - AGAUUGCUUUCAAGGUCAUUUCUU - 45
• Evidence: experimental ; 454 [1]

Mature osa-miR1882f-3p

• Accession: MIMAT0056090
• Description: Oryza sativa osa-miR1882f-3p mature miRNA
• Sequence: 118 - GAAAUGAUCUUGGAUGCAAUCU - 139
• Evidence: experimental ; unknown

References

1. PubMed ID: 18687877
   A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
   "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
   "Genome Res (2008) 18:1456-1465