miRBase entry: osa-MIR1882h

Stem-loop osa-MIR1882h


Accession
MI0008295
Description
Oryza sativa osa-MIR1882h precursor miRNA


Sequence

caugucuagaaaucuguuaucguuaccaauuuccuAGAUUGCUUUCAAGGUCAUUUCUUucugaaaccccguucccauaaauucaguauccaaagcugguuguuguaucuauggaaauaaggguuucagaaugaaaugaucuuggacgcaaucuaggaguuugcugacgauaacguuaggggucuagugcaau
..((((((((..(((((((((((((.(((.((((((((((((.((((((((((((((.(((((((((((.(((.(((((.((.(((((.(((....))).))))).)).))))).)))..))))))))))).)))))))))))))).)))))))))))).))).))))))))))...)))..))))).)))..

Structure
ca   -     aa   ---          c   u            U              U           -c   c     a  u     u   a 
  ugu cuaga  ucu   guuaucguua caa uuccuAGAUUGC UUCAAGGUCAUUUC Uucugaaaccc  guu ccaua au cagua cca a
  ||| |||||  |||   |||||||||| ||| |||||||||||| |||||||||||||| |||||||||||  ||| ||||| || ||||| |||  
  acg gaucu  gga   caauagcagu guu gaggaucuaacg agguucuaguaaag aagacuuuggg  uaa gguau ua guugu ggu g
ua   u     gg   uug          c   u            c              u           aa   a     c  u     u   c 


Annotation confidence Not enough data
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Genome context
Chr12: 21511519-21511711 [+]

Database links

Mature osa-miR1882h

Accession MIMAT0007846
Description Oryza sativa osa-miR1882h mature miRNA
Sequence 36 - AGAUUGCUUUCAAGGUCAUUUCUU - 59
Evidence experimental
454 [1]

References

  1. PubMed ID: 18687877
    A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
    "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
    "Genome Res (2008) 18:1456-1465