Stem-loop osa-MIR1883b

Accession

MI0008301

Description

Oryza sativa osa-MIR1883b precursor miRNA

Literature search

3 open access papers mention osa-MIR1883b
(3 sentences)

Sequence

85251 reads, 398.0 reads per million, 142 experiments

cgguugcagcccgucacagguaucuagucACCUGUGACGGGCCGAGAAUGGAAuccgucaaaggaacacaccuuugucagauucuacuuccugcccaucacagGUGACUAGAUACCUGUGACGGGCCgcaacuuac
.((((((.(((((((((((((((((((((((((((((.((((.(.((((((((((.(.((((((......)))))).).))))))).)))).)))).))))))))))))))))))))))))))))).))))))...

Structure

--c      a                             C    C A   -       c u      aa 
   gguugc gcccgucacagguaucuagucACCUGUGA GGGC G GAA UGGAAuc g caaagg  c
   |||||| ||||||||||||||||||||||||||||| |||| | ||| ||||||| | ||||||   
   ucaacg CGGGCAGUGUCCAUAGAUCAGUGgacacu cccg c cuu aucuuag c guuucc  a
cau      C                             a    u -   c       a u      ac 

Annotation confidence Low

Genome context

11: 9367993-9368128 [-]

Mature osa-miR1883b-5p

• Accession: MIMAT0007852
• Description: Oryza sativa osa-miR1883b-5p mature miRNA
• Sequence: 30 - ACCUGUGACGGGCCGAGAAUGGAA - 53
• Evidence: experimental ; 454 [1]

Mature osa-miR1883b-3p

• Accession: MIMAT0056098
• Description: Oryza sativa osa-miR1883b-3p mature miRNA
• Sequence: 104 - GUGACUAGAUACCUGUGACGGGCC - 127
• Evidence: experimental ; unknown

References

1. PubMed ID: 18687877
   A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
   "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
   "Genome Res (2008) 18:1456-1465