Stem-loop aga-mir-1889

Accession

MI0008309

Description

Anopheles gambiae aga-mir-1889 precursor miRNA

Literature search

3 open access papers mention aga-mir-1889
(9 sentences)

Sequence

2730 reads, 216.0 reads per million, 24 experiments

uguggcguggaugggcggCAAUCUCAAAUUGUAAUAGUGUGUcaccguuaacggcuggaccauugugcugccaucgugauccaccgagaaaaacACACAUUACAGAUUGGGAUUAccccguccaugcuccg
.(.((((((((((((.(..((((((((.(((((((.((((((.....((..(((.((((.(((.(((....))).))).)))))))..))..))))))))))))).)))))))).))))))))))))).).

Structure

u u            c gC        A       A      caccg  aa   c    c   u   c 
 g ggcguggauggg g  AAUCUCAA UUGUAAU GUGUGU     uu  cgg ugga cau gug u
 | |||||||||||| |  |||||||| ||||||| ||||||     ||  ||| |||| ||| |||  
 c ucguaccugccc c  UUAGGGUU GACAUUA CACAca     aa  gcc accu gug uac g
g c            - -A        A       -      ---aa  ga   -    a   c   c 

Annotation confidence High

Comments

This mature miRNA was cloned from Anopheles stepheni, and mapped to the A. gambiae genome [1].

Genome context

ref|NC_064601.1|: 37380017-37380147 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from aga-mir-1889

Mature aga-miR-1889-5p

• Accession: MIMAT0053033
• Description: Anopheles gambiae aga-miR-1889-5p mature miRNA
• Sequence: 19 - CAAUCUCAAAUUGUAAUAGUGUGU - 42
• Evidence: not_experimental

Mature aga-miR-1889-3p

• Accession: MIMAT0007859
• Description: Anopheles gambiae aga-miR-1889-3p mature miRNA
• Sequence: 95 - ACACAUUACAGAUUGGGAUUA - 115
• Evidence: not_experimental

References

1. PubMed ID: 18500992
   Cloning, characterization, and expression of microRNAs from the Asian malaria mosquito, Anopheles stephensi
   Mead EA, Tu Z
   BMC Genomics (2008) 9:244