Stem-loop sly-MIR1916

Accession

MI0008351

Description

Solanum lycopersicum sly-MIR1916 precursor miRNA

Literature search

3 open access papers mention sly-MIR1916
(6 sentences)

Sequence

25572 reads, 898.0 reads per million, 76 experiments

gccuaacuuauuggugaccucuuaaauuuggcacgaaAUUUCACUUAGACACCUCAAguaaagugauguucauuuuagacagcucauguaaggucuuguugugucauuuugauacaacaaaacccuacAUGAGGUGUCUAAAAUGAACAucgccuacuugaagugccuaagugaaauuucgugucaaguuuaaaggaucaccaaugaauuaggc
((((((.(((((((((((((.(((((((((((((((((((((((((((.(((.(((((((..(((((((((((((((((((.((((((((.(((.(((((((((((...))))))))))).))).)))))))).))))))))))))))))))).))))))).))).)))))))))))))))))))))))))))))).)))))))))).))))))

Structure

      c          -   c                           A   C       aa                   g        a   c           u 
gccuaa uuauugguga ccu uuaaauuuggcacgaaAUUUCACUUAG CAC UCAAgua  gugauguucauuuuagaca cucaugua ggu uuguuguguca  
|||||| |||||||||| ||| ||||||||||||||||||||||||||| ||| |||||||  ||||||||||||||||||| |||||||| ||| ||||||||||| u
cggauu aguaaccacu gga aauuugaacugugcuuuaaagugaauc gug aguucau  cgcuACAAGUAAAAUCUGU GAGUAcau cca aacaacauagu  
      a          a   -                           c   a       -c                   G        c   a           u 

Annotation confidence Low

Genome context

chr8: 57414133-57414346 [+]

Mature sly-miR1916-5p

• Accession: MIMAT0007908
• Description: Solanum lycopersicum sly-miR1916-5p mature miRNA
• Sequence: 38 - AUUUCACUUAGACACCUCAA - 57
• Evidence: experimental ; 454 [1]

Mature sly-miR1916-3p

• Accession: MIMAT0055703
• Description: Solanum lycopersicum sly-miR1916-3p mature miRNA
• Sequence: 129 - AUGAGGUGUCUAAAAUGAACA - 149
• Evidence: experimental ; unknown

References

1. PubMed ID: 18653800
   Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening
   "Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T"
   "Genome Res (2008) 18:1602-1609