Stem-loop sly-MIR1917

Accession

MI0008352

Description

Solanum lycopersicum sly-MIR1917 precursor miRNA

Literature search

3 open access papers mention sly-MIR1917
(8 sentences)

Sequence

46174 reads, 1888.0 reads per million, 78 experiments

uuuuagcggcauuaaauauugacAUUAAUAAAGAGUGCUAAAGUcuuuaccgguauuaguuaagugucauuagaaccaauguagcuaaaggcuuuagggaccuauauaaagAGUGUCAAUUGCCGCUAAAA
.((((((((((......(((((((((.(((.((.((.((((((((((((.((((.(((((........))))).)))......).))))))))))))..)))).)))....))))))))))))))))))).

Structure

u          uuaaau         ---A   A  A  -G            c ------   a     uaa 
 uuuagcggca      auugacAUU    AUA AG GU  CUAAAGUcuuua c      ggu uuagu   g
 ||||||||||      |||||||||    ||| || ||  |||||||||||| |      ||| |||||    
 AAAUCGCCGU      UAACUGUGA    uau uc ca  gauuucggaaau g      cca gauua   u
A          ------         gaaa   a  -  gg            c auguaa   a     cug 

Annotation confidence Low

Genome context

chr8: 52099541-52099671 [-]

Mature sly-miR1917-5p

• Accession: MIMAT0007909
• Description: Solanum lycopersicum sly-miR1917-5p mature miRNA
• Sequence: 24 - AUUAAUAAAGAGUGCUAAAGU - 44
• Evidence: experimental ; 454 [1]

Mature sly-miR1917-3p

• Accession: MIMAT0055704
• Description: Solanum lycopersicum sly-miR1917-3p mature miRNA
• Sequence: 112 - AGUGUCAAUUGCCGCUAAAA - 131
• Evidence: experimental ; unknown

References

1. PubMed ID: 18653800
   Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening
   "Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T"
   "Genome Res (2008) 18:1602-1609