Stem-loop sly-MIR1918

Accession

MI0008353

Description

Solanum lycopersicum sly-MIR1918 precursor miRNA

Literature search

5 open access papers mention sly-MIR1918
(59 sentences)

Sequence

4969 reads, 215.0 reads per million, 77 experiments

guugguuuaauuaguugaauugucauuuUGUUGGUGAGAGUUCGAUUCUCcauuacgcaaucuccucuucaauuuaagagaaaaagauaugcuacaaggugGAGAAUCGAACUACCGCUAACAGAAuggaaguucaaauacuuaaucaau
(((((((.......(((((((.((((((((((((((..((((((((((((((((..(((((((.(((((......)))))....)))).))).....))))))))))))))))..)))))))))))))).)))))))......)))))))

Structure

       uaauuag       g              AG                ---ac   -    ---c     ca 
guugguu       uugaauu ucauuuUGUUGGUG  AGUUCGAUUCUCcauu     gca aucu    cucuu  a
|||||||       ||||||| ||||||||||||||  ||||||||||||||||     ||| ||||    |||||   
uaacuaa       aacuuga gguAAGACAAUCGC  UCAAGCUAAGAGgugg     cgu uaga    gagaa  u
       -uucaua       a              CA                aacau   a    aaaa     uu 

Annotation confidence Medium

Genome context

chr8: 65424541-65424690 [-]

Mature sly-miR1918-5p

• Accession: MIMAT0007910
• Description: Solanum lycopersicum sly-miR1918-5p mature miRNA
• Sequence: 29 - UGUUGGUGAGAGUUCGAUUCUC - 50
• Evidence: experimental ; 454 [1]

Mature sly-miR1918-3p

• Accession: MIMAT0055705
• Description: Solanum lycopersicum sly-miR1918-3p mature miRNA
• Sequence: 102 - GAGAAUCGAACUACCGCUAACAGAA - 126
• Evidence: experimental ; unknown

References

1. PubMed ID: 18653800
   Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening
   "Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T"
   "Genome Res (2008) 18:1602-1609