Stem-loop sly-MIR1919a

Accession

MI0008354

Description

Solanum lycopersicum sly-MIR1919a precursor miRNA MIR1919

Gene
family

RF03693; MIR1919

Literature search

7 open access papers mention sly-MIR1919a
(17 sentences)

Sequence

69806 reads, 1157.0 reads per million, 79 experiments

aucUUCCGGUAGUCCUGUCGCAGAUGacucucgaucuugucauuaagccccuuucucuaagucuaauuaauuugaauucaaugugguaggACGAGAGUCAUCUGUGACAGGauuauggaagau
((((((((.((((((((((((((((((((((((.(((((((((.........(((..................)))......)))))))))))))))))))))))))))))))))))))))))

Structure

        G                        a         uaagccccu   ucuaaguc 
aucUUCCG UAGUCCUGUCGCAGAUGacucucg ucuugucau         uuc        u
|||||||| |||||||||||||||||||||||| |||||||||         |||         
uagaaggu auuaGGACAGUGUCUACUGAGAGC Aggauggug         aag        a
        -                        -         ---uaacuu   uuuaauua 

Annotation confidence Medium

Genome context

chr8: 56612335-56612457 [+]

Mature sly-miR1919a-5p

• Accession: MIMAT0055706
• Description: Solanum lycopersicum sly-miR1919a-5p mature miRNA
• Sequence: 4 - UUCCGGUAGUCCUGUCGCAGAUG - 26
• Evidence: experimental ; unknown

Mature sly-miR1919a-3p

• Accession: MIMAT0007911
• Description: Solanum lycopersicum sly-miR1919a-3p mature miRNA
• Sequence: 91 - ACGAGAGUCAUCUGUGACAGG - 111
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18653800
   Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening
   "Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T"
   "Genome Res (2008) 18:1602-1609