Stem-loop sly-MIR1919b

Accession

MI0008355

Description

Solanum lycopersicum sly-MIR1919b precursor miRNA

Literature search

5 open access papers mention sly-MIR1919b
(14 sentences)

Sequence

739659 reads, 9593.0 reads per million, 80 experiments

gccuuugauguucacaucuuccgguaguccUGUCGCAGAUGACUUUCGcccauuuauggaaccacacuuucuuuaauuugaauucuaugugguaggACGAGAGUCAUCUGUGACAGGauaauggaagaucgaguuaucaaaggc
((((((((((.....((((((((...((((((((((((((((((((((((..........((((((..(((........))).....)))))).)).))))))))))))))))))))))..)))))))).....))))))))))

Structure

          uucac        gua                      -  cauuuaugga      ---cu   uuu 
gccuuugaug     aucuuccg   guccUGUCGCAGAUGACUUUCG cc          accaca     uuc   a
||||||||||     ||||||||   |||||||||||||||||||||| ||          ||||||     |||    
cggaaacuau     uagaaggu   uaGGACAGUGUCUACUGAGAGC gg          uggugu     aag   a
          ugagc        -aa                      A  ---------a      aucuu   uuu 

Annotation confidence High

Genome context

chr8: 56580749-56580892 [+]

Mature sly-miR1919b-5p

• Accession: MIMAT0055707
• Description: Solanum lycopersicum sly-miR1919b-5p mature miRNA
• Sequence: 31 - UGUCGCAGAUGACUUUCG - 48
• Evidence: experimental ; unknown

Mature sly-miR1919b-3p

• Accession: MIMAT0007912
• Description: Solanum lycopersicum sly-miR1919b-3p mature miRNA
• Sequence: 97 - ACGAGAGUCAUCUGUGACAGG - 117
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18653800
   Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening
   "Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T"
   "Genome Res (2008) 18:1602-1609