Stem-loop sly-MIR160a

Accession

MI0008357

Description

Solanum lycopersicum sly-MIR160a precursor miRNA

Literature search

27 open access papers mention sly-MIR160a
(109 sentences)

Sequence

158974 reads, 3514.0 reads per million, 82 experiments

caagucguguacacguauaUGCCUGGCUCCCUGUAUGCCAuuugcaaagcucaccguaauauaucgaugggccuuguugaaugGCGUAUGAGGAGCCAAGCAUAuuccgauaucguguauaugauguug
...((((((((((((.((((((.(((((((.((((((((((((((((.(((((.((........)).))))).))).))))))))))))).))))))).))))))........))))))))))))....

Structure

-caa            -------u      C       C             -   a     c  uaa 
    gucguguacacg        auaUGC UGGCUCC UGUAUGCCAuuug caa gcuca cg   u
    ||||||||||||        |||||| ||||||| ||||||||||||| ||| ||||| ||    
    uaguauaugugc        uAUACG ACCGAGG GUAUGCGguaagu guu cgggu gc   a
guug            uauagccu      A       A             u   c     a  uau 

Annotation confidence High

Genome context

chr5: 65436314-65436442 [-]

Mature sly-miR160a-5p

• Accession: MIMAT0007914
• Description: Solanum lycopersicum sly-miR160a-5p mature miRNA
• Sequence: 20 - UGCCUGGCUCCCUGUAUGCCA - 40
• Evidence: experimental ; 454 [1]

Mature sly-miR160a-3p

• Accession: MIMAT0055708
• Description: Solanum lycopersicum sly-miR160a-3p mature miRNA
• Sequence: 84 - GCGUAUGAGGAGCCAAGCAUA - 104
• Evidence: experimental ; unknown

References

1. PubMed ID: 18653800
   Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening
   "Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T"
   "Genome Res (2008) 18:1602-1609