Stem-loop sly-MIR166a

Accession

MI0008358

Description

Solanum lycopersicum sly-MIR166a precursor miRNA

Literature search

28 open access papers mention sly-MIR166a
(113 sentences)

Sequence

43087183 reads, 432174.0 reads per million, 82 experiments

guugaggAGAAUGUCGUCUGGUUCGAGAUcuuucauaagaaagguaaaugaaugacaaguuuucauauauguaucgugaaugauuUCGGACCAGGCUUCAUUCCCCUcaac
(((((((.(((((..(((((((((((((((.(((((..((.(.(((.(((((.........))))).))).).))))))).)))))))))))))))..))))).)))))))

Structure

       A     UC               u     aa  a g   a     uga 
guugagg GAAUG  GUCUGGUUCGAGAUc uucau  ga a gua augaa   c
||||||| |||||  ||||||||||||||| |||||  || | ||| |||||   a
caacUCC CUUAC  CGGACCAGGCUuuag aagug  cu u uau uacuu   a
       C     UU               u     --  a g   a     uug 

Annotation confidence High

Genome context

chr6: 2516284-2516394 [-]

Mature sly-miR166a-5p

• Accession: MIMAT0055709
• Description: Solanum lycopersicum sly-miR166a-5p mature miRNA
• Sequence: 8 - AGAAUGUCGUCUGGUUCGAGAU - 29
• Evidence: experimental ; unknown

Mature sly-miR166a-3p

• Accession: MIMAT0007915
• Description: Solanum lycopersicum sly-miR166a-3p mature miRNA
• Sequence: 86 - UCGGACCAGGCUUCAUUCCCCU - 107
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18653800
   Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening
   "Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T"
   "Genome Res (2008) 18:1602-1609