miRBase entry: sly-MIR166b

Stem-loop sly-MIR166b


Accession
MI0008359
Description
Solanum lycopersicum sly-MIR166b precursor miRNA
Gene family
MIPF0000004; MIR166

Literature search
25 open access papers mention sly-MIR166b
(91 sentences)

Sequence

ucccauagaucauauggaggaaguucucucaguugaggggaauguugucuggcucgaggucaccaauuagauccauaaucccuauauauaccaugcuuuucaaaaaaaagauuuauaauaugaaaagggguuaugaaucauguguuaguguugUCGGACCAGGCUUCAUUCCCCccaauuguuacuccucuagcuagggga
((((.(((......(((((((.((.....((((((.((((((((..((((((.((((.(.(((.(((..(((.((((((((((.(((((......(((((.....))))).......)))))...)))))))))).)))....))).))).).)))).))))))..)))))))).))))))..))))))))).))).))))

Structure
    a   aucaua       a  ucucu      a        uu      c    g u   c   --ua   c          --a     -accaug     c 
uccc uag      uggagga gu     caguug ggggaaug  gucugg ucga g cac aau    gau cauaaucccu   uauau       cuuuu a
|||| |||      ||||||| ||     |||||| ||||||||  |||||| |||| | ||| |||    ||| ||||||||||   |||||       ||||| a
aggg auc      aucuccu ca     guuaac CCCCUUAC  CGGACC GGCU u gug uug    cua guauugggga   guaua       gaaaa a
    g   -----g       -  ---uu      c        UU      A    g u   a   ugua   a          aaa     auauuua     a 


Annotation confidence Not enough data
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Genome context
chr8: 65694593-65694793 [+]

Database links

Mature sly-miR166b

Accession MIMAT0007916
Description Solanum lycopersicum sly-miR166b mature miRNA
Sequence 154 - UCGGACCAGGCUUCAUUCCCC - 174
Evidence experimental
454 [1]

References

  1. PubMed ID: 18653800
    Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening
    "Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T"
    "Genome Res (2008) 18:1602-1609