Stem-loop sly-MIR166b

Accession

MI0008359

Description

Solanum lycopersicum sly-MIR166b precursor miRNA

Literature search

24 open access papers mention sly-MIR166b
(91 sentences)

Sequence

28034718 reads, 287734.0 reads per million, 82 experiments

ucccauagaucauauggaggaaguucucucaguugaggGGAAUGUUGUCUGGCUCGAGGucaccaauuagauccauaaucccuauauauaccaugcuuuucaaaaaaaagauuuauaauaugaaaagggguuaugaaucauguguuaguguugUCGGACCAGGCUUCAUUCCCCccaauuguuacuccucuagcuagggga
((((.(((......(((((((.((.....((((((.((((((((..((((((.((((.(.(((.(((..(((.((((((((((.(((((......(((((.....))))).......)))))...)))))))))).)))....))).))).).)))).))))))..)))))))).))))))..))))))))).))).))))

Structure

    a   aucaua       a  ucucu      a        UU      C    G u   c   --ua   c          --a     -accaug     c 
uccc uag      uggagga gu     caguug ggGGAAUG  GUCUGG UCGA G cac aau    gau cauaaucccu   uauau       cuuuu a
|||| |||      ||||||| ||     |||||| ||||||||  |||||| |||| | ||| |||    ||| ||||||||||   |||||       ||||| a
aggg auc      aucuccu ca     guuaac CCCCUUAC  CGGACC GGCU u gug uug    cua guauugggga   guaua       gaaaa a
    g   -----g       -  ---uu      c        UU      A    g u   a   ugua   a          aaa     auauuua     a 

Annotation confidence High

Genome context

chr8: 65694593-65694793 [+]

Mature sly-miR166b-5p

• Accession: MIMAT0055710
• Description: Solanum lycopersicum sly-miR166b-5p mature miRNA
• Sequence: 39 - GGAAUGUUGUCUGGCUCGAGG - 59
• Evidence: experimental ; unknown

Mature sly-miR166b-3p

• Accession: MIMAT0007916
• Description: Solanum lycopersicum sly-miR166b-3p mature miRNA
• Sequence: 154 - UCGGACCAGGCUUCAUUCCCC - 174
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18653800
   Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening
   "Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T"
   "Genome Res (2008) 18:1602-1609