Stem-loop sly-MIR167a

Accession

MI0008360

Description

Solanum lycopersicum sly-MIR167a precursor miRNA

Literature search

28 open access papers mention sly-MIR167a
(218 sentences)

Sequence

1347911 reads, 23243.0 reads per million, 82 experiments

ucgugcagcacuagcaguUGAAGCUGCCAGCAUGAUCUAAacuuuccuuuuaguucaaauauaauucgaggaaagAUCAGAUCAUGUGGCAGCcuuaccugucaaugccaucacga
(((((..(((...((((.(((.(((((((.((((((((...((((((((..((((.......)))).))))))))...))))))))))))))).))).))))...)))...)))))

Structure

     -ca   cua    u   A       G        AAa        uu    ca 
ucgug   gca   gcag UGA GCUGCCA CAUGAUCU   cuuuccuu  aguu  a
|||||   |||   |||| ||| ||||||| ||||||||   ||||||||  ||||  a
agcac   cgu   uguc auu CGACGGU GUACUAGA   gaaaggag  uuaa  u
     uac   aac    c   c       -        CUA        -c    ua 

Annotation confidence Medium

Genome context

chr6: 49339356-49339471 [-]

Mature sly-miR167a-5p

• Accession: MIMAT0007917
• Description: Solanum lycopersicum sly-miR167a-5p mature miRNA
• Sequence: 19 - UGAAGCUGCCAGCAUGAUCUAA - 40
• Evidence: experimental ; 454 [1]

Mature sly-miR167a-3p

• Accession: MIMAT0055711
• Description: Solanum lycopersicum sly-miR167a-3p mature miRNA
• Sequence: 76 - AUCAGAUCAUGUGGCAGC - 93
• Evidence: experimental ; unknown

References

1. PubMed ID: 18653800
   Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening
   "Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T"
   "Genome Res (2008) 18:1602-1609


2. PubMed ID: 18602455
   Identification of conserved microRNAs and their targets from Solanum lycopersicum Mill
   "Zhang J, Zeng R, Chen J, Liu X, Liao Q"
   "Gene (2008) 423:1-7