Stem-loop sly-MIR169b

Accession

MI0008362

Description

Solanum lycopersicum sly-MIR169b precursor miRNA

Literature search

19 open access papers mention sly-MIR169b
(50 sentences)

Sequence

26828 reads, 1420.0 reads per million, 77 experiments

uuuuaauuugguuucaGGCAGUCUCCUUGGCUACCuugacaugcucuuuucuuuuaugcaagauaucuuuucaaaauagaaguuuuagucaucguuaaaauaucgagacgggguuacaagucuuauuuaaaagaagagaagucuagcaugaugagaagagucuuauuuggUAGCCAAGGAUGACUUGCCUGcaccguacuugaaa
.(((((..((((..(((((((((((((((((((((.......(((((((((..((((((.((((.(((((((......((.(((((((......))))))).))(((((..(....)..)))))........))))))).)))).)))))).))))))))).......)))))))))))).))).)))))).))))...))))).

Structure

u     -uu    uu      -   -            uugacau         uu      a    a       ----------------------aaaaua  a       uc 
 uuuaa   uggu  caGGCA GUC UCCUUGGCUACC       gcucuuuuc  uuaugc agau ucuuuuc                            ga guuuuag  a
 |||||   ||||  |||||| ||| ||||||||||||       |||||||||  |||||| |||| |||||||                            || |||||||   
 aaguu   gcca  GUCCGU CAG AGGAACCGAUgg       ugagaagag  aguacg ucug agagaag                            cu uaaaauu  u
a     cau    -c      U   U            uuuauuc         -u      a    a       aaaauuuauucugaacauuggggcagag  a       gc 

Annotation confidence High

Genome context

chr7: 2174563-2174767 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from sly-MIR169b

Mature sly-miR169b-5p

• Accession: MIMAT0055713
• Description: Solanum lycopersicum sly-miR169b-5p mature miRNA
• Sequence: 17 - GGCAGUCUCCUUGGCUACC - 35
• Evidence: experimental ; unknown

Mature sly-miR169b-3p

• Accession: MIMAT0007919
• Description: Solanum lycopersicum sly-miR169b-3p mature miRNA
• Sequence: 171 - UAGCCAAGGAUGACUUGCCUG - 191
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18653800
   Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening
   "Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T"
   "Genome Res (2008) 18:1602-1609