Stem-loop sly-MIR169c

Accession

MI0008363

Description

Solanum lycopersicum sly-MIR169c precursor miRNA

Literature search

18 open access papers mention sly-MIR169c
(49 sentences)

Sequence

11769 reads, 687.0 reads per million, 76 experiments

gucuagagaguuauuguaugaagagguagggaguggagugCAGCCAAGGAUGACUUGCCGAgauguuguagccuaaugcaaugacauaucgGCAGGUCAUCUUUGGCUACAuuuuauucucuccuauucauguaaaacuuuauagac
(((((.((((((.(((((((((.(((.(((((((((((((.((((((((((((((((((((.(((((((.((.....)).))))))).)))))))))))))))))))).)))))))))))))))).))))))))))))))).)))))

Structure

     g      a         g   u             C                    g       a  c 
gucua agaguu uuguaugaa agg agggaguggagug AGCCAAGGAUGACUUGCCGA auguugu gc u
||||| |||||| ||||||||| ||| ||||||||||||| |||||||||||||||||||| ||||||| || a
cagau uuucaa aauguacuu ucc ucucuuauuuuAC UCGGUUUCUACUGGACGgcu uacagua cg a
     a      -         a   -             A                    a       a  u 

Annotation confidence Medium

Genome context

chr7: 4210774-4210920 [+]

Mature sly-miR169c-5p

• Accession: MIMAT0007920
• Description: Solanum lycopersicum sly-miR169c-5p mature miRNA
• Sequence: 41 - CAGCCAAGGAUGACUUGCCGA - 61
• Evidence: experimental ; 454 [1]

Mature sly-miR169c-3p

• Accession: MIMAT0055714
• Description: Solanum lycopersicum sly-miR169c-3p mature miRNA
• Sequence: 92 - GCAGGUCAUCUUUGGCUACA - 111
• Evidence: experimental ; unknown

References

1. PubMed ID: 18653800
   Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening
   "Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T"
   "Genome Res (2008) 18:1602-1609