Stem-loop sly-MIR169d

Accession

MI0008364

Description

Solanum lycopersicum sly-MIR169d precursor miRNA

Literature search

16 open access papers mention sly-MIR169d
(45 sentences)

Sequence

18374 reads, 994.0 reads per million, 77 experiments

gaagagggguuuuauaugaaguugagaguauuauuuagUAGCCAAGGAUGACUUGCCUAcuucauuugauauauaguuuaaaauaauaauauugacaauauuugucauuuggucguagGCAAGUUAUCCUGGCUAUCUugacaugcucguaauuuuucauguaagaccuuaucuuc
(((((.((((((((((((((((((.((((((......(((((((.(((((((((((((((.(((..(((((.(((......((((....)))).....))).)))))..)))..))))))))))))))))))))))......)))))).))))..))))))))))))))..)))))

Structure

     -g              --    a      uauuua       A               -u   uu     u   guuuaa    a 
gaaga  ggguuuuauaugaa  guug gaguau      gUAGCCA GGAUGACUUGCCUAc  uca  ugaua aua      aaua u
|||||  ||||||||||||||  |||| ||||||      ||||||| |||||||||||||||  |||  ||||| |||      ||||  
cuucu  uccagaauguacuu  uaau cucgua      UAUCGGU CCUAUUGAACGgaug  ggu  acugu uau      uuau a
     au              uu    g      caguUC       -               cu   uu     u   -aacag    a 

Annotation confidence High

Genome context

chr7: 2171588-2171763 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from sly-MIR169d

Mature sly-miR169d-5p

• Accession: MIMAT0007921
• Description: Solanum lycopersicum sly-miR169d-5p mature miRNA
• Sequence: 39 - UAGCCAAGGAUGACUUGCCUA - 59
• Evidence: experimental ; 454 [1]

Mature sly-miR169d-3p

• Accession: MIMAT0055715
• Description: Solanum lycopersicum sly-miR169d-3p mature miRNA
• Sequence: 119 - GCAAGUUAUCCUGGCUAUCU - 138
• Evidence: experimental ; unknown

References

1. PubMed ID: 18653800
   Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening
   "Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T"
   "Genome Res (2008) 18:1602-1609