Stem-loop sly-MIR171c

Accession

MI0008367

Description

Solanum lycopersicum sly-MIR171c precursor miRNA

Literature search

24 open access papers mention sly-MIR171c
(128 sentences)

Sequence

133881 reads, 2645.0 reads per million, 80 experiments

caaauggaugaauacacgagaUAUUGGUGCGGUUCAAUGAGAaagcaguacuuaagaacauuuuugagucuacuuuuugaUUGAGCCGCGCCAAUAUCACguguagcuaaaucuuuaguug
.....((((...((((((.(((((((((((((((((((.((((((.((.((((((((....)))))))))).)))))).))))))))))))))))))).)))))).....)))).......

Structure

--caaau    --gaa      a                   G      c  u        a 
       ggau     uacacg gaUAUUGGUGCGGUUCAAU AGAaag ag acuuaaga c
       ||||     |||||| ||||||||||||||||||| |||||| || ||||||||  
       ucua     augugC CUAUAACCGCGCCGAGUUa uuuuuc uc ugaguuuu a
guugauu    aaucg      A                   g      a  -        u 

Annotation confidence Medium

Genome context

chr12: 519779-519899 [-]

Mature sly-miR171c-5p

• Accession: MIMAT0007924
• Description: Solanum lycopersicum sly-miR171c-5p mature miRNA
• Sequence: 22 - UAUUGGUGCGGUUCAAUGAGA - 42
• Evidence: experimental ; 454 [1]

Mature sly-miR171c-3p

• Accession: MIMAT0055717
• Description: Solanum lycopersicum sly-miR171c-3p mature miRNA
• Sequence: 81 - UUGAGCCGCGCCAAUAUCAC - 100
• Evidence: experimental ; unknown

References

1. PubMed ID: 18653800
   Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening
   "Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T"
   "Genome Res (2008) 18:1602-1609