Stem-loop sly-MIR171d

Accession

MI0008368

Description

Solanum lycopersicum sly-MIR171d precursor miRNA

Literature search

23 open access papers mention sly-MIR171d
(132 sentences)

Sequence

53910 reads, 1529.0 reads per million, 78 experiments

auggaagaagCGAUGUUGGUGAGGUUCAAUCcgaagacgaauuuaugcuuauuuucguaaagaacgaucucagaUUGAGCCGCGCCAAUAUCACuucuuauuuucauuccgu
((((((((((.((((((((((.(((((((((.((.((((..((((((........))))))...)).)))).))))))))).)))))))))).))))).........)))))

Structure

     ---------     C          A         c  a  -  -aa      cuu 
augga         agaag GAUGUUGGUG GGUUCAAUC ga ga cg   uuuaug   a
|||||         ||||| |||||||||| ||||||||| || || ||   ||||||    
ugccu         ucuuC CUAUAACCGC CCGAGUUag cu cu gc   aaaugc   u
     uacuuuuau     A          G         a  -  a  aag      uuu 

Annotation confidence High

Genome context

chr12: 2882790-2882901 [+]

Mature sly-miR171d-5p

• Accession: MIMAT0055718
• Description: Solanum lycopersicum sly-miR171d-5p mature miRNA
• Sequence: 11 - CGAUGUUGGUGAGGUUCAAUC - 31
• Evidence: experimental ; unknown

Mature sly-miR171d-3p

• Accession: MIMAT0007925
• Description: Solanum lycopersicum sly-miR171d-3p mature miRNA
• Sequence: 75 - UUGAGCCGCGCCAAUAUCAC - 94
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18653800
   Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening
   "Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T"
   "Genome Res (2008) 18:1602-1609