Stem-loop sly-MIR395a

Accession

MI0008369

Description

Solanum lycopersicum sly-MIR395a precursor miRNA

Literature search

14 open access papers mention sly-MIR395a
(48 sentences)

Sequence

5026 reads, 212.0 reads per million, 79 experiments

agggcuuacuuugauguuggaagccuugCUGAAGUGUUUGGGGGAACUCCcggguugacuuugaaaauuacgcaaacaaguauauauaaaugcaugaguacguauuagcuaaagaugaugaguacaauauugauucauguaccuuuggaGUUCCCUUGACCACUUCAUGAgagcuuaauauuugauuguuugaaguccu
(((((((((...(((((((..(((((((.(((((((.(((((((((((((.((((.............(((........))).........((((((((((.(((((........))))).)))).........))))))))))..))))))))))))).))))))))))).)))))))))).....))...)))))))

Structure

       ---  --uuu       ga   -    C       U             -c    ugacuuugaaaauuacgcaaacaaguauauauaaau      ---------    g     gcu 
agggcuu   ac     gauguug  agc cuug UGAAGUG UUGGGGGAACUCC  gggu                                    gcauga         guac uauua   a
|||||||   ||     |||||||  ||| |||| ||||||| |||||||||||||  ||||                                    ||||||         |||| |||||    
uccugaa   ug     uuauaau  ucg gAGU ACUUCAC AGUUCCCUUGagg  ucca                                    uguacu         caug guagu   a
       guu  uuagu       --   a    -       C             uu    ------------------------------------      uaguuauaa    a     aga 

Annotation confidence High

Genome context

chr5: 1703152-1703350 [+]

Mature sly-miR395a-5p

• Accession: MIMAT0007926
• Description: Solanum lycopersicum sly-miR395a-5p mature miRNA
• Sequence: 29 - CUGAAGUGUUUGGGGGAACUCC - 50
• Evidence: experimental ; 454 [1]

Mature sly-miR395a-3p

• Accession: MIMAT0055719
• Description: Solanum lycopersicum sly-miR395a-3p mature miRNA
• Sequence: 150 - GUUCCCUUGACCACUUCAUGA - 170
• Evidence: experimental ; unknown

References

1. PubMed ID: 18653800
   Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening
   "Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T"
   "Genome Res (2008) 18:1602-1609