Stem-loop sly-MIR395b

Accession

MI0008370

Description

Solanum lycopersicum sly-MIR395b precursor miRNA

Literature search

12 open access papers mention sly-MIR395b
(34 sentences)

Sequence

4834 reads, 203.0 reads per million, 79 experiments

uuaagguguucccuagaGUUCCCUUGACCACUUCAUGAgggcuuacuuugauguuagaagcguugCUGAAGUGUUUGGGGGAACUCCuggguugacuuuaa
.((((((...(((..((((((((((((.(((((((..((.((((.((........)))))).))..))))))).))))))))))))..)))...)))))).

Structure

u      guu   ua            C       UG  g    a  uug 
 uaaggu   ccc  gaGUUCCCUUGA CACUUCA  Ag gcuu cu   a
 ||||||   |||  |||||||||||| |||||||  || |||| ||    
 auuuca   ggg  CUCAAGGGGGUU GUGAAGU  uu cgaa ga   u
a      guu   uC            U       Cg  g    -  uug 

Annotation confidence High

Genome context

chr5: 1713691-1713791 [+]

Mature sly-miR395b-5p

• Accession: MIMAT0055720
• Description: Solanum lycopersicum sly-miR395b-5p mature miRNA
• Sequence: 18 - GUUCCCUUGACCACUUCAUGA - 38
• Evidence: experimental ; unknown

Mature sly-miR395b-3p

• Accession: MIMAT0007927
• Description: Solanum lycopersicum sly-miR395b-3p mature miRNA
• Sequence: 66 - CUGAAGUGUUUGGGGGAACUCC - 87
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18653800
   Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening
   "Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T"
   "Genome Res (2008) 18:1602-1609


2. PubMed ID: 18602455
   Identification of conserved microRNAs and their targets from Solanum lycopersicum Mill
   "Zhang J, Zeng R, Chen J, Liu X, Liao Q"
   "Gene (2008) 423:1-7