Stem-loop sly-MIR397

Accession

MI0008371

Description

Solanum lycopersicum sly-MIR397 precursor miRNA

Literature search

7 open access papers mention sly-MIR397
(27 sentences)

Sequence

cagaguacuuagaaacaugAUUGAGUGCAGCGUUGAUGAcauauuugagaaguccugcauuugggccuuccucauuuuucaUCAACGCUAAACUCGAUCAUGuuuuuaauucucug
(((((...((((((((((((((((((..(((((((((((...(..(((((((.(((......))).))).))))..).)))))))))))..))))))))))))))))))..)))))

Structure

     uac                  GC           cau uu    -   u   gc 
cagag   uuagaaacaugAUUGAGU  AGCGUUGAUGA   a  ugag aag ccu  a
|||||   ||||||||||||||||||  |||||||||||   |  |||| ||| |||   
gucuc   aauuuuuGUACUAGCUCA  UCGCAACUacu   u  acuc uuc ggg  u
     -uu                  AA           --u uu    c   c   uu 

Annotation confidence Low

Genome context

chr7: 66059126-66059241 [-]

Mature sly-miR397-5p

• Accession: MIMAT0007928
• Description: Solanum lycopersicum sly-miR397-5p mature miRNA
• Sequence: 20 - AUUGAGUGCAGCGUUGAUGA - 39
• Evidence: experimental ; 454 [1]

Mature sly-miR397-3p

• Accession: MIMAT0037335
• Description: Solanum lycopersicum sly-miR397-3p mature miRNA
• Sequence: 82 - UCAACGCUAAACUCGAUCAUG - 102
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 18653800
   Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening
   "Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T"
   "Genome Res (2008) 18:1602-1609


2. PubMed ID: 25218481
   Prediction and characterization of Tomato leaf curl New Delhi virus (ToLCNDV) responsive novel microRNAs in Solanum lycopersicum
   "Pradhan B, Naqvi AR, Saraf S, Mukherjee SK, Dey N"
   "Virus Res (2015) 195:183-195