Stem-loop dsi-mir-31b

Accession

MI0009444

Description

Drosophila simulans dsi-mir-31b precursor miRNA

Sequence

316 reads, 1731.0 reads per million, 6 experiments

caaauaaugaauuUGGCAAGAUGUCGGAAUAGCUGagagcacagcggaucgagccucuuaucguccgaaaaaaugugauuauuuuugaaaagcggcuaugccucaucuagucaauugcauuacuuug
(((((((((...(((((.(((((..((.(((((((.........((((.(((........))))))).(((((((....)))))))......))))))).)).))))).)))))...))))).))))

Structure

    -     aau     A     UC  A       ----------------agagcacag    u   gcc 
caaa uaaug   uUGGC AGAUG  GG AUAGCUG                         cgga cga   u
|||| |||||   ||||| |||||  || |||||||                         |||| |||    
guuu auuac   aacug ucuac  cc uaucggc                         gccu gcu   c
    c     guu     a     -u  g       gaaaaguuuuuauuaguguaaaaaa    -   auu 

Annotation confidence Not enough data

Genome context

ref|NC_029795.1|: 8424719-8424845 [-]

Mature dsi-miR-31b-5p

• Accession: MIMAT0008878
• Description: Drosophila simulans dsi-miR-31b-5p mature miRNA
• Sequence: 14 - UGGCAAGAUGUCGGAAUAGCUG - 35
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20037610
   Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
   "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
   "Nat Genet (2010) 42:6-9


2. PubMed ID: 17994087
   Evolution of genes and genomes on the Drosophila phylogeny
   "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
   "Nature (2007) 450:203-218