miRBase entry: mmu-mir-1306

Stem-loop mmu-mir-1306

Accession

MI0009935

Symbol

MGI: Mir1306

Description

Mus musculus mmu-mir-1306 precursor miRNA mir-1306

Gene
family?

RF01014; mir-1306

Literature search

8 open access papers mention mmu-mir-1306
(27 sentences)

Sequence

9732 reads, 45 reads per million, 102 experiments

cagucucCACCACCUCCCCUGCAAACGUCCagugaugcagagguaauggACGUUGGCUCUGGUGGUGAUGgacaguccg
..((((.(((((((......((.((((((((...((......))..)))))))).))...)))))))..))))......

Structure

----ca    -c       UCCCCU  A        gug  gc 
      gucu  CACCACC      GC AACGUCCa   au  a
      ||||  |||||||      || ||||||||   ||   
      cagG  GUGGUGG      CG UUGCAggu   ug  g
gccuga    UA       ---UCU  G        -aa  ga

Annotation confidence High

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Genome context

chr16: 18284239-18284317 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mmu-mir-1306

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature mmu-miR-1306-3p

Accession	MIMAT0009411
Description	Mus musculus mmu-miR-1306-3p mature miRNA
Sequence	50 - ACGUUGGCUCUGGUGGUGAUG - 70
Evidence	experimental Illumina [1-3]
Database links
Predicted targets

Mature mmu-miR-1306-5p

Accession	MIMAT0019136
Description	Mus musculus mmu-miR-1306-5p mature miRNA
Sequence	8 - CACCACCUCCCCUGCAAACGUCC - 30
Evidence	experimental Illumina [3]
Database links
Predicted targets

References

PubMed ID: 20413612
Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
"Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
"Genes Dev (2010) 24:992-1009

PubMed ID: 18849523
In-depth characterization of the microRNA transcriptome in a leukemia progression model
"Kuchenbauer F, Morin RD, Argiropoulos B, Petriv OI, Griffith M, Heuser M, Yung E, Piper J, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Hansen CL, Marra MA, Humphries RK"
"Genome Res (2008) 18:1787-1797

PubMed ID: 20935160
Next-generation sequencing identifies the natural killer cell microRNA transcriptome
"Fehniger TA, Wylie T, Germino E, Leong JW, Magrini VJ, Koul S, Keppel CR, Schneider SE, Koboldt DC, Sullivan RP, Heinz ME, Crosby SD, Nagarajan R, Ramsingh G, Link DC, Ley TJ, Mardis ER"
"Genome Res (2010) 20:1590-1604