Stem-loop mmu-mir-669m-1

Accession

MI0009943

Symbol

MGI: Mir669m-1

Description

Mus musculus mmu-mir-669m-1 precursor miRNA

Literature search

11 open access papers mention mmu-mir-669m-1
(16 sentences)

Sequence

2911 reads, 119 reads per million, 90 experiments

uguaugugcauguguguauaguuuUGUGUGCAUGUGCAUGUGUGUAUaugaauagacAUAUACAUCCACACAAACAUAUacaagcaagcacagauaca
(((((((((.(((.((((((..((((((((.(((((.((((.(((......))).)))).))))).))))))))..)))))).))).)))))..))))

Structure

    --     a   g      gu        C     C    G   AU 
ugua  ugugc ugu uguaua  uuUGUGUG AUGUG AUGU UGU  a
||||  ||||| ||| ||||||  |||||||| ||||| |||| |||   
acau  acacg acg acaUAU  AAACACAC UACAU UAca aua  u
    ag     a   a      AC        C     A    g   ag 

Annotation confidence High

Genome context

chr2: 10512790-10512887 [+]

Clustered miRNAs

22 other miRNAs are < 10 kb from mmu-mir-669m-1

Mature mmu-miR-669m-5p

• Accession: MIMAT0017346
• Description: Mus musculus mmu-miR-669m-5p mature miRNA
• Sequence: 25 - UGUGUGCAUGUGCAUGUGUGUAU - 47
• Evidence: experimental ; Illumina [2]

Mature mmu-miR-669m-3p

• Accession: MIMAT0009419
• Description: Mus musculus mmu-miR-669m-3p mature miRNA
• Sequence: 58 - AUAUACAUCCACACAAACAUAU - 79
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009


2. PubMed ID: 18849523
   In-depth characterization of the microRNA transcriptome in a leukemia progression model
   "Kuchenbauer F, Morin RD, Argiropoulos B, Petriv OI, Griffith M, Heuser M, Yung E, Piper J, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Hansen CL, Marra MA, Humphries RK"
   "Genome Res (2008) 18:1787-1797