Stem-loop bfl-mir-1

Accession

MI0010008

Description

Branchiostoma floridae bfl-mir-1 precursor miRNA

Gene family

MIPF0000038; mir-1

Sequence

ccaggccuguuaagcauAAGUACUUCUUUACUAUCCCAUacugaacucaauuguaUGGAAUGUAAAGAAGUAUGUAUgguuagcaggcuaccacgu
...((((((((((.((((.((((((((((((.((.((((((...........)))))).)))))))))))))).)))).)))))))))).......

Structure

----cca          g    A            U  C      ugaa 
       ggccuguuaa cauA GUACUUCUUUAC AU CCAUac    c
       |||||||||| |||| |||||||||||| || ||||||    u
       ucggacgauu gUAU UAUGAAGAAAUG UA GGUaug    c
ugcacca          g    G            -  A      uuaa 

Annotation confidence Not enough data

Genome context

GG666601.1: 1444175-1444270 [+]

Mature bfl-miR-1-3p

• Accession: MIMAT0009463
• Description: Branchiostoma floridae bfl-miR-1-3p mature miRNA
• Sequence: 56 - UGGAAUGUAAAGAAGUAUGUAU - 77
• Evidence: experimental ; 454 [1]

Mature bfl-miR-1-5p

• Accession: MIMAT0019137
• Description: Branchiostoma floridae bfl-miR-1-5p mature miRNA
• Sequence: 18 - AAGUACUUCUUUACUAUCCCAU - 39
• Evidence: experimental ; 454 [2]

References

1. PubMed ID: 19196333
   The deep evolution of metazoan microRNAs
   "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
   "Evol Dev (2009) 11:50-68


2. PubMed ID: 21210939
   microRNA complements in deuterostomes: origin and evolution of microRNAs
   "Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M"
   "Evol Dev (2011) 13:15-27