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microRNA complements in deuterostomes: origin and evolution of microRNAs |
|
|---|---|
| PubMed ID | 21210939 |
| Authors | "Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M" |
| Journal | "Evol Dev |
| Volume | 13 |
| Pages | 15-27 |
| Name | Accession | RPM | Chromosome | Start | End | Strand | Confidence |
|---|---|---|---|---|---|---|---|
| bfl-mir-1 | MI0010008 | None | ref|NC_049980.1| | 25940027 | 25940122 | - | - |
| bfl-mir-22 | MI0010014 | None | ref|NC_049989.1| | 18881863 | 18881947 | - | - |
| bfl-mir-29a | MI0010015 | None | ref|NC_049983.1| | 19807070 | 19807164 | + | - |
| bfl-mir-29b | MI0010016 | None | None | None | - | ||
| bfl-mir-31 | MI0010017 | None | ref|NC_049993.1| | 300532 | 300632 | - | - |
| bfl-mir-71 | MI0010020 | None | ref|NC_049984.1| | 7950535 | 7950635 | - | - |
| bfl-mir-92b | MI0010023 | None | ref|NC_049981.1| | 13639421 | 13639521 | + | - |
| bfl-mir-96 | MI0010024 | None | ref|NC_049983.1| | 18505898 | 18505998 | + | - |
| bfl-mir-100 | MI0010025 | None | ref|NC_049979.1| | 15363807 | 15363906 | + | - |
| bfl-mir-124 | MI0010026 | None | GG666480.1 | 1879911 | 1880011 | + | - |
| bfl-mir-125a | MI0010027 | None | ref|NC_049979.1| | 15365540 | 15365640 | + | - |
| bfl-mir-184 | MI0010032 | None | ref|NC_049981.1| | 9876265 | 9876365 | + | - |
| bfl-mir-210 | MI0010038 | None | ref|NC_049982.1| | 18727138 | 18727238 | + | - |
| bfl-mir-216 | MI0010039 | None | ref|NC_049979.1| | 16400696 | 16400770 | - | - |
| bfl-mir-252b | MI0010043 | None | ref|NC_049982.1| | 20093366 | 20093466 | - | - |
| sko-mir-1 | MI0010145 | None | GL012728.1 | 111768 | 111861 | - | - |
| sko-mir-7 | MI0010146 | None | GL010990.1 | 410972 | 411057 | + | - |
| sko-mir-29b | MI0010151 | None | ACQM01008700.1 | 2515 | 2610 | + | - |
| sko-mir-34 | MI0010154 | None | GL013651.1 | 114431 | 114531 | - | - |
| sko-mir-96 | MI0010160 | None | GL011980.1 | 36622 | 36709 | + | - |
| sko-mir-193a | MI0010171 | None | GL012752.1 | 7651 | 7719 | + | - |
| sko-mir-210 | MI0010172 | None | GL014552.1 | 344767 | 344867 | - | - |
| sko-mir-365 | MI0010179 | None | GL012752.1 | 8972 | 9058 | + | - |
| spu-mir-92b | MI0010199 | None | gb|AAGJ06000006.1| | 26946632 | 26946732 | - | - |
| spu-mir-125 | MI0010203 | None | gb|AAGJ06000001.1| | 27044713 | 27044813 | + | - |
| spu-mir-153 | MI0010205 | None | gb|AAGJ06000019.1| | 10025866 | 10025966 | - | - |
| spu-mir-278 | MI0010210 | None | gb|AAGJ06000002.1| | 25922634 | 25922733 | - | - |
| sko-mir-2012 | MI0010265 | None | GL016179.1 | 444445 | 444521 | + | - |
| spu-mir-2002 | MI0010272 | None | gb|AAGJ06000001.1| | 43632812 | 43632907 | - | - |
| spu-mir-2003 | MI0010273 | None | gb|AAGJ06000001.1| | 27024177 | 27024266 | + | - |
| bfl-mir-2058 | MI0010493 | None | ref|NC_049984.1| | 18063112 | 18063193 | - | - |
| bfl-mir-2059 | MI0010494 | None | ref|NC_049994.1| | 4472630 | 4472711 | + | - |
| bfl-mir-2062 | MI0010497 | None | ref|NC_049986.1| | 15355273 | 15355354 | + | - |
| bfl-mir-2068 | MI0010506 | None | ref|NC_049980.1| | 24867349 | 24867430 | + | - |
| bfl-mir-2070 | MI0010508 | None | ref|NC_049987.1| | 24240335 | 24240415 | - | - |
| bfl-mir-2071 | MI0010509 | None | ref|NC_049982.1| | 18526426 | 18526506 | + | - |
| bfl-mir-2072 | MI0010510 | None | ref|NC_049983.1| | 20597074 | 20597155 | - | - |
| bfl-mir-34b | MI0010512 | None | ref|NC_049995.1| | 3397455 | 3397536 | + | - |
| bfl-mir-2076 | MI0010515 | None | ref|NC_049986.1| | 19602347 | 19602428 | + | - |
| bfl-let-7a-1 | MI0010516 | None | ref|NC_049979.1| | 15364075 | 15364156 | + | - |
| sko-mir-4817 | MI0017548 | None | GL012752.1 | 7978 | 8078 | - | - |
| sko-mir-4818a | MI0017549 | None | GL015416.1 | 65099 | 65176 | - | - |
| sko-mir-4818b | MI0017550 | None | GL015416.1 | 64345 | 64436 | - | - |
| sko-mir-4818c | MI0017551 | None | GL015416.1 | 65470 | 65568 | - | - |
| sko-mir-4818d | MI0017552 | None | GL015416.1 | 64657 | 64757 | - | - |
| sko-mir-4818e | MI0017553 | None | GL015416.1 | 63398 | 63498 | - | - |
| sko-mir-4818f | MI0017554 | None | GL015416.1 | 63295 | 63397 | - | - |
| sko-mir-4818g | MI0017555 | None | GL015416.1 | 64531 | 64631 | - | - |
| sko-mir-4819 | MI0017556 | None | GL010822.1 | 246687 | 246786 | + | - |
| sko-mir-4820 | MI0017557 | None | GL013470.1 | 533417 | 533516 | + | - |
| sko-mir-4821 | MI0017558 | None | GL011044.1 | 182174 | 182273 | - | - |
| sko-mir-2007 | MI0017559 | None | GL016937.1 | 82896 | 82995 | + | - |
| sko-mir-4822 | MI0017560 | None | GL015953.1 | 274883 | 274955 | + | - |
| sko-mir-4823 | MI0017561 | None | GL011189.1 | 122830 | 122929 | - | - |
| sko-mir-4824 | MI0017562 | None | GL015169.1 | 702293 | 702392 | - | - |
| sko-mir-4825 | MI0017563 | None | GL014245.1 | 130730 | 130829 | - | - |
| sko-mir-4826 | MI0017564 | None | GL011565.1 | 19751 | 19851 | + | - |
| sko-mir-4827a | MI0017565 | None | ACQM01063029.1 | 1121 | 1202 | + | - |
| sko-mir-4827b | MI0017566 | None | GL015512.1 | 107183 | 107263 | + | - |
| sko-mir-4828a | MI0017567 | None | GL013274.1 | 368915 | 369007 | - | - |
| sko-mir-4828b | MI0017568 | None | GL013274.1 | 368571 | 368673 | - | - |
| sko-mir-4829a | MI0017569 | None | GL010720.1 | 415686 | 415785 | - | - |
| sko-mir-4829b | MI0017570 | None | GL010720.1 | 415918 | 416018 | - | - |
| sko-mir-4829c | MI0017571 | None | GL010720.1 | 415462 | 415561 | - | - |
| sko-mir-4830a | MI0017572 | None | GL014282.1 | 4622 | 4703 | - | - |
| sko-mir-4830b | MI0017573 | None | GL014282.1 | 5091 | 5177 | - | - |
| sko-mir-4830c | MI0017574 | None | GL014282.1 | 5437 | 5530 | - | - |
| sko-mir-4831 | MI0017575 | None | GL012799.1 | 28396 | 28485 | - | - |
| sko-mir-4832 | MI0017576 | None | GL010949.1 | 354335 | 354417 | + | - |
| sko-mir-2006 | MI0017577 | None | GL012026.1 | 124705 | 124804 | + | - |
| sko-mir-4833 | MI0017578 | None | ACQM01002869.1 | 2188 | 2259 | + | - |
| sko-mir-4834 | MI0017579 | None | GL012876.1 | 115381 | 115460 | - | - |
| sko-mir-4835 | MI0017580 | None | GL015469.1 | 154880 | 154968 | - | - |
| sko-mir-4836 | MI0017581 | None | GL011256.1 | 574547 | 574638 | + | - |
| sko-mir-4837 | MI0017582 | None | GL016927.1 | 110645 | 110725 | + | - |
| sko-mir-4830d | MI0017583 | None | GL016280.1 | 32659 | 32760 | - | - |
| sko-mir-4838 | MI0017584 | None | GL017468.1 | 407582 | 407669 | - | - |
| sko-mir-4839 | MI0017585 | None | GL011044.1 | 182970 | 183047 | - | - |
| sko-mir-4840 | MI0017586 | None | GL018003.1 | 163877 | 163959 | + | - |
| sko-mir-4841-1 | MI0017587 | None | GL012229.1 | 76561 | 76646 | - | - |
| sko-mir-4841-2 | MI0017588 | None | GL012229.1 | 75877 | 75962 | - | - |
| sko-mir-4842 | MI0017589 | None | GL014402.1 | 3145796 | 3145871 | + | - |
| sko-mir-4843 | MI0017590 | None | GL010949.1 | 353783 | 353873 | + | - |
| sko-mir-4844 | MI0017591 | None | ACQM01017831.1 | 197 | 278 | - | - |
| sko-mir-4845 | MI0017592 | None | GL013792.1 | 225877 | 225959 | + | - |
| sko-mir-4846 | MI0017593 | None | GL011034.1 | 307753 | 307846 | + | - |
| spu-mir-29b | MI0017594 | None | gb|AAGJ06000828.1| | 36399 | 36483 | + | - |
| spu-mir-981 | MI0017595 | None | gb|AAGJ06000011.1| | 20172212 | 20172289 | + | - |
| spu-mir-4847 | MI0017596 | None | gb|AAGJ06000004.1| | 4948618 | 4948698 | - | - |
| spu-mir-4848a | MI0017597 | None | gb|AAGJ06000014.1| | 6114367 | 6114434 | + | - |
| spu-mir-4848b | MI0017598 | None | gb|AAGJ06000019.1| | 12294129 | 12294214 | - | - |
| spu-mir-4849 | MI0017599 | None | gb|AAGJ06000002.1| | 170328 | 170415 | + | - |
| spu-mir-4850 | MI0017600 | None | gb|AAGJ06000004.1| | 21138398 | 21138483 | - | - |
| spu-mir-4851 | MI0017601 | None | gb|AAGJ06000004.1| | 1461950 | 1462041 | - | - |
| spu-mir-4852 | MI0017602 | None | gb|AAGJ06000018.1| | 10176311 | 10176389 | + | - |
| spu-mir-4853-1 | MI0017603 | None | gb|AAGJ06000010.1| | 290406 | 290497 | + | - |
| spu-mir-4854 | MI0017604 | None | gb|AAGJ06000011.1| | 17301508 | 17301601 | + | - |
| spu-mir-4855 | MI0017605 | None | KN920165.1 | 127548 | 127637 | - | - |
| bfl-mir-92d | MI0017606 | None | ref|NC_049979.1| | 12400547 | 12400629 | - | - |
| bfl-mir-129b | MI0017607 | None | ref|NC_049992.1| | 13848272 | 13848359 | - | - |
| bfl-mir-182b | MI0017608 | None | ref|NC_049980.1| | 17547802 | 17547901 | - | - |
| bfl-mir-4856a | MI0017609 | None | ref|NC_049988.1| | 15242298 | 15242385 | - | - |
| bfl-mir-4857 | MI0017610 | None | ref|NC_049988.1| | 15244452 | 15244527 | - | - |
| bfl-mir-4858 | MI0017611 | None | ref|NC_049994.1| | 10703559 | 10703629 | - | - |
| bfl-mir-4859 | MI0017612 | None | ref|NC_049979.1| | 14957264 | 14957351 | + | - |
| bfl-mir-4860 | MI0017613 | None | ref|NC_049983.1| | 11749656 | 11749729 | + | - |
| bfl-mir-4861 | MI0017614 | None | ref|NC_049984.1| | 8835165 | 8835258 | + | - |
| bfl-mir-4862 | MI0017615 | None | ref|NC_049988.1| | 15243746 | 15243811 | - | - |
| bfl-mir-4856b | MI0017617 | None | ref|NC_049988.1| | 15242863 | 15242949 | - | - |
| bfl-mir-4863 | MI0017618 | None | ref|NC_049983.1| | 20597411 | 20597503 | - | - |
| bfl-mir-4864 | MI0017619 | None | ref|NC_049979.1| | 27696674 | 27696754 | - | - |
| bfl-mir-4865 | MI0017620 | None | ref|NC_049983.1| | 11748775 | 11748858 | + | - |
| bfl-mir-4866 | MI0017621 | None | ref|NC_049983.1| | 19807613 | 19807704 | + | - |
| bfl-mir-4867 | MI0017622 | None | ref|NC_049981.1| | 27635436 | 27635508 | - | - |
| bfl-mir-4868a | MI0017623 | None | ref|NC_049981.1| | 9953150 | 9953226 | - | - |
| bfl-mir-4868b | MI0017624 | None | ref|NC_049981.1| | 9942461 | 9942551 | - | - |
| bfl-mir-4868c | MI0017625 | None | ref|NC_049994.1| | 9332970 | 9333056 | + | - |
| bfl-mir-4869 | MI0017626 | None | ref|NC_049988.1| | 15245621 | 15245702 | - | - |
| bfl-mir-4870 | MI0017627 | None | ref|NC_049993.1| | 7978079 | 7978168 | + | - |
| bfl-mir-193b | MI0017628 | None | ref|NC_049982.1| | 12294544 | 12294621 | + | - |
| bfl-mir-4871 | MI0017629 | None | ref|NW_023365955.1| | 83216 | 83288 | - | - |
| bfl-mir-4872a | MI0017630 | None | ref|NC_049995.1| | 13214035 | 13214122 | + | - |
| bfl-mir-4872b | MI0017631 | None | None | None | - | ||
| bfl-mir-4872c-1 | MI0017632 | None | ref|NC_049995.1| | 13194555 | 13194637 | + | - |
| bfl-mir-4872c-2 | MI0017633 | None | ref|NC_049995.1| | 13194755 | 13194840 | + | - |
| bfl-mir-4928 | MI0017634 | None | ref|NC_049984.1| | 11307749 | 11307827 | - | - |
| bfl-mir-34c-1 | MI0017635 | None | ref|NC_049996.1| | 3242807 | 3242898 | + | - |
| bfl-mir-4873 | MI0017636 | None | ref|NC_049988.1| | 7250310 | 7250387 | - | - |
| bfl-mir-4874 | MI0017637 | None | ref|NC_049983.1| | 19101222 | 19101315 | - | - |
| bfl-mir-4875a | MI0017638 | None | ref|NC_049983.1| | 12520109 | 12520189 | + | - |
| bfl-mir-4875b | MI0017639 | None | ref|NC_049993.1| | 10665889 | 10665963 | + | - |
| bfl-mir-4875c | MI0017640 | None | ref|NC_049992.1| | 3568355 | 3568435 | + | - |
| bfl-mir-4875d | MI0017641 | None | None | None | - | ||
| bfl-mir-4876 | MI0017642 | None | ref|NC_049984.1| | 7355955 | 7356046 | + | - |
| bfl-mir-4877 | MI0017643 | None | ref|NW_023365693.1| | 9451 | 9537 | - | - |
| bfl-mir-4878 | MI0017644 | None | ref|NC_049990.1| | 7448161 | 7448233 | + | - |
| bfl-mir-4879 | MI0017645 | None | ref|NW_023365693.1| | 8725 | 8799 | - | - |
| bfl-mir-4880 | MI0017646 | None | ref|NC_049980.1| | 18843913 | 18844003 | + | - |
| bfl-mir-4881 | MI0017647 | None | ref|NC_049989.1| | 11513741 | 11513831 | - | - |
| bfl-mir-4057-1 | MI0017648 | None | ref|NC_049979.1| | 13086173 | 13086263 | - | - |
| bfl-mir-4882a | MI0017649 | None | ref|NC_049993.1| | 19271599 | 19271672 | - | - |
| bfl-mir-4882b | MI0017650 | None | ref|NC_049993.1| | 19272017 | 19272101 | - | - |
| bfl-mir-4882c | MI0017651 | None | ref|NC_049993.1| | 19271722 | 19271816 | - | - |
| bfl-mir-4883 | MI0017652 | None | ref|NC_049980.1| | 5200437 | 5200510 | + | - |
| bfl-mir-4884 | MI0017653 | None | ref|NC_049993.1| | 19274502 | 19274576 | - | - |
| bfl-mir-4885 | MI0017654 | None | ref|NC_049993.1| | 17905935 | 17906015 | + | - |
| bfl-mir-4886 | MI0017656 | None | ref|NC_049987.1| | 6930949 | 6931027 | - | - |
| bfl-mir-4887 | MI0017657 | None | ref|NW_023365726.1| | 63862 | 63948 | + | - |
| bfl-mir-4888 | MI0017658 | None | ref|NC_049989.1| | 2529753 | 2529825 | + | - |
| bfl-mir-4889a | MI0017659 | None | ref|NC_049988.1| | 10383058 | 10383157 | + | - |
| bfl-mir-4889b | MI0017660 | None | ref|NC_049992.1| | 7651474 | 7651557 | + | - |
| bfl-mir-182c | MI0017661 | None | ref|NC_049980.1| | 17527681 | 17527777 | - | - |
| bfl-mir-4890 | MI0017662 | None | ref|NC_049984.1| | 7949232 | 7949322 | - | - |
| bfl-mir-4891 | MI0017663 | None | ref|NC_049980.1| | 2032936 | 2033023 | + | - |
| bfl-mir-4892 | MI0017664 | None | ref|NC_049991.1| | 4777614 | 4777708 | + | - |
| bfl-mir-4893 | MI0017665 | None | ref|NC_049983.1| | 102183 | 102273 | + | - |
| bfl-mir-182d | MI0017666 | None | ref|NC_049980.1| | 17527938 | 17528036 | - | - |
| bfl-mir-4894 | MI0017667 | None | ref|NC_049995.1| | 13214205 | 13214297 | + | - |
| bfl-mir-4895 | MI0017668 | None | ref|NW_023365716.1| | 795097 | 795192 | + | - |
| bfl-mir-4897 | MI0017670 | None | ref|NC_049980.1| | 2356263 | 2356348 | + | - |
| bfl-mir-4898 | MI0017672 | None | ref|NC_049980.1| | 26354802 | 26354888 | + | - |
| bfl-mir-4899 | MI0017673 | None | ref|NC_049989.1| | 19012049 | 19012134 | - | - |
| bfl-mir-4900a-1 | MI0017674 | None | ref|NC_049989.1| | 18854232 | 18854306 | - | - |
| bfl-mir-4900b-1 | MI0017675 | None | ref|NC_049989.1| | 18854731 | 18854801 | - | - |
| bfl-mir-4901 | MI0017676 | None | ref|NC_049980.1| | 24261024 | 24261105 | - | - |
| bfl-mir-4902 | MI0017677 | None | ref|NC_049979.1| | 3384565 | 3384652 | - | - |
| bfl-mir-34d | MI0017678 | None | ref|NC_049996.1| | 201111 | 201198 | - | - |
| bfl-mir-34e | MI0017679 | None | ref|NC_049996.1| | 3244465 | 3244552 | + | - |
| bfl-mir-4903 | MI0017680 | None | ref|NC_049992.1| | 21412787 | 21412873 | + | - |
| bfl-mir-4904 | MI0017681 | None | ref|NC_049995.1| | 10666869 | 10666947 | - | - |
| bfl-mir-4905 | MI0017682 | None | ref|NC_049984.1| | 5801834 | 5801909 | - | - |
| bfl-mir-4906 | MI0017683 | None | ref|NC_049980.1| | 2989606 | 2989683 | - | - |
| sko-mir-219 | MI0019594 | None | ACQM01084247.1 | 297 | 397 | - | - |
| bfl-mir-153 | MI0022168 | None | ref|NC_049988.1| | 729620 | 729704 | + | - |
| xtr-mir-190 | MI0022169 | None | 8 | 143495806 | 143495891 | + | - |
| tgu-mir-183 | MI0022170 | None | chr1A | 193617 | 193692 | - | - |
| tgu-mir-196-1 | MI0022171 | None | chr2 | 52627136 | 52627210 | - | - |
| tgu-mir-367 | MI0022172 | None | chr4 | 2681244 | 2681318 | - | - |
| tgu-mir-499 | MI0022173 | None | chr20 | 3206374 | 3206451 | - | - |
| tgu-mir-1397 | MI0022174 | None | chr1 | 21937138 | 21937221 | + | - |
| tgu-mir-1460 | MI0022175 | None | chr1A | 6126702 | 6126798 | - | - |
| tgu-mir-1467-1 | MI0022176 | None | chr2 | 142442502 | 142442594 | - | - |
| tgu-mir-1641 | MI0022177 | None | chr3 | 24223279 | 24223369 | - | - |
| tgu-mir-1669 | MI0022178 | None | chr13_random | 1575721 | 1575812 | + | - |
| tgu-mir-1743 | MI0022179 | None | chr1 | 68004845 | 68004947 | - | - |
| tgu-mir-1744 | MI0022180 | None | chr10 | 9793845 | 9793917 | + | - |
| tgu-mir-1756 | MI0022181 | None | chrZ | 71086721 | 71086817 | - | - |
| tgu-mir-1759 | MI0022182 | None | chr2 | 69112458 | 69112547 | + | - |
| tgu-mir-1781 | MI0022183 | None | chr14 | 12375993 | 12376078 | + | - |
| tgu-mir-1788 | MI0022184 | None | chr7 | 10349941 | 10350019 | - | - |
| tgu-mir-1789 | MI0022185 | None | chr11 | 15106373 | 15106463 | + | - |
| tgu-mir-1791 | MI0022186 | None | chr11 | 15194877 | 15194956 | + | - |
| tgu-mir-2131 | MI0022187 | None | chrZ | 31624265 | 31624361 | - | - |
| tgu-mir-30e-1 | MI0022188 | None | chr2 | 149534042 | 149534120 | - | - |
| bfl-mir-4057-2 | MI0023542 | None | ref|NC_049979.1| | 13086173 | 13086263 | - | - |
| bfl-mir-34c-2 | MI0023543 | None | ref|NC_049996.1| | 202771 | 202862 | - | - |
| bfl-mir-4900a-2 | MI0023544 | None | ref|NC_049989.1| | 18866197 | 18866270 | - | - |
| bfl-mir-4900b-2 | MI0023545 | None | ref|NC_049989.1| | 18866439 | 18866527 | - | - |
| tgu-mir-1467-2 | MI0031748 | None | chrUn | 165189797 | 165189889 | + | - |
| spu-mir-4853-2 | MI0031749 | None | gb|AAGJ06000019.1| | 31772682 | 31772773 | + | - |
| bfl-mir-4896 | MI0017669 | None | None | None | Low | ||
| bfl-mir-4862b | MI0017616 | None | None | None | Low | ||
| bfl-mir-4885b | MI0017655 | None | None | None | Low | ||
| bfl-mir-4897b | MI0017671 | None | None | None | Low | ||
| sko-mir-125b | MI0017547 | None | None | None | Low |