miRBase entry: bfl-mir-4856b

Stem-loop bfl-mir-4856b

Accession

MI0017617

Description

Branchiostoma floridae bfl-mir-4856b precursor miRNA

Sequence

guguucacccuugucUCGCAUUGACGUCAGCGCCGCAAaacuuuuuuaaaggCGGAGCUCACGCCAGUGCAACAcaauggugaaacc
...((((((.((((...((((((.(((.(((.((((...............)))).))).))).))))))...)))).))))))...

Structure

gug      c    cUC      A   C   G    AAaacu 
   uucacc uugu   GCAUUG CGU AGC CCGC      u
   |||||| ||||   |||||| ||| ||| ||||      u
   aagugg aacA   CGUGAC GCA UCG GGCg      u
cca      u    CAA      C   C   A    gaaauu

Annotation confidence Not enough data

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Genome context

GG666534.1: 219709-219795 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from bfl-mir-4856b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature bfl-miR-4856b-5p

Accession	MIMAT0020093
Description	Branchiostoma floridae bfl-miR-4856b-5p mature miRNA
Sequence	16 - UCGCAUUGACGUCAGCGCCGCAA - 38
Evidence	experimental 454 [1]

Mature bfl-miR-4856b-3p

Accession	MIMAT0020094
Description	Branchiostoma floridae bfl-miR-4856b-3p mature miRNA
Sequence	53 - CGGAGCUCACGCCAGUGCAACA - 74
Evidence	experimental 454 [1]

References

PubMed ID: 21210939
microRNA complements in deuterostomes: origin and evolution of microRNAs
"Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M"
"Evol Dev (2011) 13:15-27