Stem-loop sko-mir-4818e

Accession

MI0017553

Description

Saccoglossus kowalevskii sko-mir-4818e precursor miRNA mir-4818

Gene
family

RF04013; mir-4818

Sequence

ugcuauauucuauguugacggaaCCUUUCUACUGUGUGCAAUUAGuguuaguuucauucuCAUUGCACACAAUAGUGGGGCuuuauuacauaaccauauca
..........(((((.((.(((.((((.(((.((((((((((.((((.......))))...)))))))))).))).)))).))).))))))).........

Structure

ugcuauauuc     u  c   a    U   C          --U    uu 
          uaugu ga gga CCUU CUA UGUGUGCAAU   AGug  a
          ||||| || ||| |||| ||| ||||||||||   ||||  g
          auaca uu uuu GGGG GAU ACACACGUUA   uuac  u
-acuauacca     -  a   C    U   A          Cuc    uu 

Annotation confidence Low

Genome context

GL015416.1: 63398-63498 [-]

Clustered miRNAs

6 other miRNAs are < 10 kb from sko-mir-4818e

Mature sko-miR-4818e-5p

• Accession: MIMAT0020014
• Description: Saccoglossus kowalevskii sko-miR-4818e-5p mature miRNA
• Sequence: 24 - CCUUUCUACUGUGUGCAAUUAG - 45
• Evidence: experimental ; 454 [1]

Mature sko-miR-4818e-3p

• Accession: MIMAT0020015
• Description: Saccoglossus kowalevskii sko-miR-4818e-3p mature miRNA
• Sequence: 61 - CAUUGCACACAAUAGUGGGGC - 81
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 21210939
   microRNA complements in deuterostomes: origin and evolution of microRNAs
   "Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M"
   "Evol Dev (2011) 13:15-27