Stem-loop bfl-mir-216

Accession

MI0010039

Description

Branchiostoma floridae bfl-mir-216 precursor miRNA

Gene family

MIPF0000054; mir-216

Sequence

ugguugugUAAUCUCAGCUGGCAACUGUGAGucuaacuucacauccuCACGGUGCAAGCUGGGAUCGCUcaaacu
...(((.((.(((((((((.(((.(((((((..............)))))))))).))))))))).)).)))...

Structure

ugg   u  A         G   A       ucuaac 
   uug gU AUCUCAGCU GCA CUGUGAG      u
   ||| || ||||||||| ||| |||||||       
   aac CG UAGGGUCGA CGU GGCACuc      u
uca   U  C         A   -       cuacac 

Annotation confidence Not enough data

Genome context

GG666479.1: 961712-961786 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bfl-mir-216

Mature bfl-miR-216-5p

• Accession: MIMAT0009495
• Description: Branchiostoma floridae bfl-miR-216-5p mature miRNA
• Sequence: 9 - UAAUCUCAGCUGGCAACUGUGAG - 31
• Evidence: experimental ; 454 [1]

Mature bfl-miR-216-3p

• Accession: MIMAT0019150
• Description: Branchiostoma floridae bfl-miR-216-3p mature miRNA
• Sequence: 48 - CACGGUGCAAGCUGGGAUCGCU - 69
• Evidence: experimental ; 454 [2]

References

1. PubMed ID: 19196333
   The deep evolution of metazoan microRNAs
   "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
   "Evol Dev (2009) 11:50-68


2. PubMed ID: 21210939
   microRNA complements in deuterostomes: origin and evolution of microRNAs
   "Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M"
   "Evol Dev (2011) 13:15-27