Stem-loop bfl-mir-2072

Accession

MI0010510

Description

Branchiostoma floridae bfl-mir-2072 precursor miRNA

Gene family

MIPF0001697; mir-2072

Sequence

ucuugcUGCAACAUCACAGUGACCACAUaggccagucaaugUGAGCACUGCGAUGUGGUAUUaagaucuggccaugccacac
(((((.(((.(((((.(((((..(((((.(......).)))))..))))).))))).))).)))))..((((...))))...

Structure

----------------     c   A     A     AC     a gc 
                ucuug UGC ACAUC CAGUG  CACAU g  c
                ||||| ||| ||||| |||||  ||||| |   
                agaaU AUG UGUAG GUCAC  GUgua c  a
cacaccguaccggucu     U   G     C     GA     a ug 

Annotation confidence Not enough data

Genome context

GG666556.1: 536442-536523 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bfl-mir-2072

Mature bfl-miR-2072-5p

• Accession: MIMAT0010000
• Description: Branchiostoma floridae bfl-miR-2072-5p mature miRNA
• Sequence: 7 - UGCAACAUCACAGUGACCACAU - 28
• Evidence: experimental ; cloned [1], 454 [2]

Mature bfl-miR-2072-3p

• Accession: MIMAT0019173
• Description: Branchiostoma floridae bfl-miR-2072-3p mature miRNA
• Sequence: 42 - UGAGCACUGCGAUGUGGUAUU - 62
• Evidence: experimental ; 454 [2]

References

1. PubMed ID: 19196332
   Characterization of microRNAs in cephalochordates reveals a correlation between microRNA repertoire homology and morphological similarity in chordate evolution
   "Dai Z, Chen Z, Ye H, Zhou L, Cao L, Wang Y, Peng S, Chen L"
   "Evol Dev (2009) 11:41-49


2. PubMed ID: 21210939
   microRNA complements in deuterostomes: origin and evolution of microRNAs
   "Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M"
   "Evol Dev (2011) 13:15-27