miRBase entry: sko-mir-4817

Stem-loop sko-mir-4817


Accession
MI0017548
Description
Saccoglossus kowalevskii sko-mir-4817 precursor miRNA


Sequence

gaugauaauguucuucuguuuUUGGGAUUUCGCUGGCCAGUAUgaggauuguacguuucauacuguggccagagaaacccccaaaacauaugaacagcuuu
........(((((...((((((.(((.((((.(((((((((((((((........))))))))..))))))).)))).))).))))))...))))).....

Structure
gaugauaa     uuc      U   A    G       --        auu 
        uguuc   uguuuU GGG UUUC CUGGCCA  GUAUgagg   g
        |||||   |||||| ||| |||| |||||||  ||||||||    
        acaag   acaaaa ccc aaag gaccggu  cauacuuu   u
---uuucg     uau      c   c    a       gu        gca 


Annotation confidence Not enough data
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Genome context
GL012752.1: 7978-8078 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from sko-mir-4817
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sko-miR-4817-5p

Accession MIMAT0020008
Description Saccoglossus kowalevskii sko-miR-4817-5p mature miRNA
Sequence 22 - UUGGGAUUUCGCUGGCCAGUAU - 43
Evidence experimental
454 [1]

References

  1. PubMed ID: 21210939
    microRNA complements in deuterostomes: origin and evolution of microRNAs
    "Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M"
    "Evol Dev (2011) 13:15-27