Stem-loop bfl-mir-96

Accession

MI0010024

Description

Branchiostoma floridae bfl-mir-96 precursor miRNA

Gene family

MIPF0000072; mir-96

Sequence

ccugccucuuucuugcucugUUUGGCACUAGCACAUUUUUGCUgggcagguguguaggCCAAAAUUGUUAGUGCCAAAUacagccugaaagccggacuuac
.(((...(((((..(((.(((((((((((((((.(((((.(((..(((....))).))).)))))))))))))))))))).)))..))))).)))......

Structure

-----c   ccu     uu   c               C     U   gg   g 
      cug   cuuuc  gcu ugUUUGGCACUAGCA AUUUU GCU  gca g
      |||   |||||  ||| ||||||||||||||| ||||| |||  |||  
      ggc   gaaag  cga aUAAACCGUGAUUGU UAAAA Cgg  ugu u
cauuca   --c     uc   c               -     C   -a   g 

Annotation confidence Not enough data

Genome context

GG666602.1: 1109798-1109898 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bfl-mir-96

Mature bfl-miR-96-5p

• Accession: MIMAT0009480
• Description: Branchiostoma floridae bfl-miR-96-5p mature miRNA
• Sequence: 21 - UUUGGCACUAGCACAUUUUUGCU - 43
• Evidence: experimental ; 454 [1]

Mature bfl-miR-96-3p

• Accession: MIMAT0019144
• Description: Branchiostoma floridae bfl-miR-96-3p mature miRNA
• Sequence: 59 - CCAAAAUUGUUAGUGCCAAAU - 79
• Evidence: experimental ; 454 [2]

References

1. PubMed ID: 19196333
   The deep evolution of metazoan microRNAs
   "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
   "Evol Dev (2009) 11:50-68


2. PubMed ID: 21210939
   microRNA complements in deuterostomes: origin and evolution of microRNAs
   "Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M"
   "Evol Dev (2011) 13:15-27