Stem-loop sko-mir-34

Accession

MI0010154

Description

Saccoglossus kowalevskii sko-mir-34 precursor miRNA

Sequence

gacuuacuauaugccacagugUGGCAGUGUGGUUAGCUGGUUGuuaauuauaauuucaACCAUCUGAUCAUCUGCCUAUAcagugacauaaccaaucaucc
.........((((.(((.(((((((((.((((((((.((((((.............)))))).))))))))))))).)))).))).))))...........

Structure

--gacuuacua    c   a    -     U        C      uuaau 
           uaug cac gugU GGCAG GUGGUUAG UGGUUG     u
           |||| ||| |||| ||||| |||||||| ||||||     a
           auac gug cAUA CCGUC UACUAGUC ACCAac     u
ccuacuaacca    a   a    U     -        U      uuuaa 

Annotation confidence Not enough data

Genome context

GL013651.1: 114431-114531 [-]

Mature sko-miR-34-5p

• Accession: MIMAT0009616
• Description: Saccoglossus kowalevskii sko-miR-34-5p mature miRNA
• Sequence: 22 - UGGCAGUGUGGUUAGCUGGUUG - 43
• Evidence: experimental ; 454 [1]

Mature sko-miR-34-3p

• Accession: MIMAT0019155
• Description: Saccoglossus kowalevskii sko-miR-34-3p mature miRNA
• Sequence: 59 - ACCAUCUGAUCAUCUGCCUAUA - 80
• Evidence: experimental ; 454 [2]

References

1. PubMed ID: 19196333
   The deep evolution of metazoan microRNAs
   "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
   "Evol Dev (2009) 11:50-68


2. PubMed ID: 21210939
   microRNA complements in deuterostomes: origin and evolution of microRNAs
   "Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M"
   "Evol Dev (2011) 13:15-27