miRBase entry: bfl-mir-29b

Stem-loop bfl-mir-29b


Accession
MI0010016
Description
Branchiostoma floridae bfl-mir-29b precursor miRNA
Gene family
MIPF0000009; mir-29


Sequence

cacugcagguuuucuauccuggaagACUGGUUCCAAGUGGUGGGUAGAuggcacugagaucuAGCACCAUUUGAAAUCAGUGCUUucaggacuag
.............(((((((((((((((((((.(((((((((..(((((.........))))).))))))))).))))))).))))))))).)))

Structure
cacugcagguuuu   -         -       C         GG     ggc 
             cua uccuggaag ACUGGUU CAAGUGGUG  UAGAu   a
             ||| ||||||||| ||||||| |||||||||  |||||   c
             gau aggacuUUC UGACUAA GUUUACCAC  Aucua   u
-------------   c         G       A         -G     gag 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature bfl-miR-29b-3p

Accession MIMAT0009472
Description Branchiostoma floridae bfl-miR-29b-3p mature miRNA
Sequence 63 - AGCACCAUUUGAAAUCAGUGCUU - 85
Evidence experimental
454 [1]

Mature bfl-miR-29b-5p

Accession MIMAT0019140
Description Branchiostoma floridae bfl-miR-29b-5p mature miRNA
Sequence 26 - ACUGGUUCCAAGUGGUGGGUAGA - 48
Evidence experimental
454 [2]

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68

  2. PubMed ID: 21210939
    microRNA complements in deuterostomes: origin and evolution of microRNAs
    "Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M"
    "Evol Dev (2011) 13:15-27