Stem-loop spu-mir-2002

Accession

MI0010272

Description

Strongylocentrotus purpuratus spu-mir-2002 precursor miRNA mir-2002

Gene
family

RF03821; mir-2002

Sequence

uauucaucagacugauaAGACCAACAGGUGUUAUUCUCAugugugauguacagaucugUGAAUACAUCUGCUGGUUUUUAUuaggcucgaugauag
...(((((((.((((((((((((.(((((((.((((.((.((.((.....)).)).)).))))))))))).))).))))))))).)).)))))...

Structure

uau     -  a         -   A       U    U  u  g  a 
   ucauc ag cugauaAGA CCA CAGGUGU AUUC CA gu ug u
   ||||| || ||||||||| ||| ||||||| |||| || || || g
   aguag uc gauUAUUUU GGU GUCUACA UAAG gu ua ac u
gau     c  g         U   C       -    U  c  g  a 

Annotation confidence Low

Genome context

KN916283.1: 1144519-1144614 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from spu-mir-2002

Mature spu-miR-2002-3p

• Accession: MIMAT0009743
• Description: Strongylocentrotus purpuratus spu-miR-2002-3p mature miRNA
• Sequence: 59 - UGAAUACAUCUGCUGGUUUUUAU - 81
• Evidence: experimental ; 454 [1]

Mature spu-miR-2002-5p

• Accession: MIMAT0019165
• Description: Strongylocentrotus purpuratus spu-miR-2002-5p mature miRNA
• Sequence: 18 - AGACCAACAGGUGUUAUUCUCA - 39
• Evidence: experimental ; 454 [2]

References

1. PubMed ID: 19196333
   The deep evolution of metazoan microRNAs
   "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
   "Evol Dev (2009) 11:50-68


2. PubMed ID: 21210939
   microRNA complements in deuterostomes: origin and evolution of microRNAs
   "Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M"
   "Evol Dev (2011) 13:15-27