miRBase entry: sko-mir-4821

Stem-loop sko-mir-4821


Accession
MI0017558
Description
Saccoglossus kowalevskii sko-mir-4821 precursor miRNA


Sequence

aaaauaccuaauguggugguugaguugauauuaguagguuaccauggcaacauauuucugGCACCUGCUGCUAUCAACUGAuucacccauuacauaucau
...(((..(((((.(((((.(.((((((((.((((((((..(((((....))......))).)))))))).)))))))).).))))))))))..)))...

Structure
aaa   cc     u     u g        u        ua   ------  g 
   aua  uaaug ggugg u aguugaua uaguaggu  cca      ug c
   |||  ||||| ||||| | |||||||| ||||||||  |||      ||  
   uau  auuac ccacu A UCAACUAU GUCGUCCA  Ggu      ac a
uac   ac     -     u G        C        -C   cuuuau  a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
GL011044.1: 182174-182273 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from sko-mir-4821
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sko-miR-4821

Accession MIMAT0020022
Description Saccoglossus kowalevskii sko-miR-4821 mature miRNA
Sequence 61 - GCACCUGCUGCUAUCAACUGA - 81
Evidence experimental
454 [1]

References

  1. PubMed ID: 21210939
    microRNA complements in deuterostomes: origin and evolution of microRNAs
    "Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M"
    "Evol Dev (2011) 13:15-27