Stem-loop spu-mir-278

Accession

MI0010210

Description

Strongylocentrotus purpuratus spu-mir-278 precursor miRNA mir-278_2

Gene
family

RF04186; mir-278_2

Sequence

caaacugccucuucuccUGGAAUGAAAGCCUCGCCAAUCugucauuguuacuaagcuaggUCGGUGGGACUUUCGUUCGAUUagaagaugguagauacua
....(((((((((((..(.(((((((((.((((((.(((((.(...........).))))).)))))).))))))))).)..)))))).)))))......

Structure

--caaa     -      cc G         C      A     u auug 
      cugcc ucuucu  U GAAUGAAAG CUCGCC AUCug c    u
      ||||| ||||||  | ||||||||| |||||| ||||| |    u
      gaugg agaaga  A CUUGCUUUC GGGUGG Uggau g    a
aucaua     u      UU G         A      C     c aauc 

Annotation confidence Low

Genome context

KN919517.1: 187990-188089 [+]

Mature spu-miR-278-3p

• Accession: MIMAT0009674
• Description: Strongylocentrotus purpuratus spu-miR-278-3p mature miRNA
• Sequence: 61 - UCGGUGGGACUUUCGUUCGAUU - 82
• Evidence: experimental ; 454 [1]

Mature spu-miR-278-5p

• Accession: MIMAT0019163
• Description: Strongylocentrotus purpuratus spu-miR-278-5p mature miRNA
• Sequence: 18 - UGGAAUGAAAGCCUCGCCAAUC - 39
• Evidence: experimental ; 454 [2]

References

1. PubMed ID: 19196333
   The deep evolution of metazoan microRNAs
   "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
   "Evol Dev (2009) 11:50-68


2. PubMed ID: 21210939
   microRNA complements in deuterostomes: origin and evolution of microRNAs
   "Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M"
   "Evol Dev (2011) 13:15-27