Stem-loop bfl-let-7a-1

Accession

MI0010516

Description

Branchiostoma floridae bfl-let-7a-1 precursor miRNA

Literature search

1 open access papers mention bfl-let-7a-1
(4 sentences)

Sequence

cugaggUGAGGUAGUAGGUUGUAUAGUUcagaaguacaacauuggagauGACUGUACAACCCGUUACCUUUuuuugggucau
((((((.(((((((..(((((((((((.((......((....))....)))))))))))))..))))))).)))))).....

Structure

-----      U       UA           U  gaagua  a 
     cugagg GAGGUAG  GGUUGUAUAGU ca      ca c
     |||||| |||||||  ||||||||||| ||      ||  
     gguuuu UUCCAUU  CCAACAUGUCA Gu      gu a
uacug      U       GC           -  --agag  u 

Annotation confidence Not enough data

Genome context

ref|NC_049979.1|: 15364075-15364156 [+]

Clustered miRNAs

6 other miRNAs are < 10 kb from bfl-let-7a-1

Mature bfl-let-7a-5p

• Accession: MIMAT0009462
• Description: Branchiostoma floridae bfl-let-7a-5p mature miRNA
• Sequence: 7 - UGAGGUAGUAGGUUGUAUAGUU - 28
• Evidence: experimental ; cloned [1]

Mature bfl-let-7a-3p

• Accession: MIMAT0019176
• Description: Branchiostoma floridae bfl-let-7a-3p mature miRNA
• Sequence: 50 - GACUGUACAACCCGUUACCUUU - 71
• Evidence: experimental ; 454 [2]

References

1. PubMed ID: 19196332
   Characterization of microRNAs in cephalochordates reveals a correlation between microRNA repertoire homology and morphological similarity in chordate evolution
   "Dai Z, Chen Z, Ye H, Zhou L, Cao L, Wang Y, Peng S, Chen L"
   "Evol Dev (2009) 11:41-49


2. PubMed ID: 21210939
   microRNA complements in deuterostomes: origin and evolution of microRNAs
   "Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M"
   "Evol Dev (2011) 13:15-27