Stem-loop sko-mir-1

Accession

MI0010145

Description

Saccoglossus kowalevskii sko-mir-1 precursor miRNA

Sequence

gaggucucguuuacagaACGUACUUCUUUAUAAUUCCAUAccuuauucccaucuguaUGGAAUGUAAUGAAGUAUGUAUuguuagucgggaaaa
....(((((...((((.(((((((((.(((((.((((((((.............))))))))))))).))))))))).))))....)))))...

Structure

gagg     -uuu    a         U     A        cuuau 
    ucucg    acag ACGUACUUC UUAUA UUCCAUAc     u
    |||||    |||| ||||||||| ||||| ||||||||     c
    agggc    uguU UGUAUGAAG AAUGU AAGGUaug     c
-aaa     ugau    A         U     -        ucuac 

Annotation confidence Low

Genome context

GL012728.1: 111768-111861 [-]

Mature sko-miR-1-3p

• Accession: MIMAT0009607
• Description: Saccoglossus kowalevskii sko-miR-1-3p mature miRNA
• Sequence: 58 - UGGAAUGUAAUGAAGUAUGUAU - 79
• Evidence: experimental ; 454 [1]

Mature sko-miR-1-5p

• Accession: MIMAT0019152
• Description: Saccoglossus kowalevskii sko-miR-1-5p mature miRNA
• Sequence: 18 - ACGUACUUCUUUAUAAUUCCAUA - 40
• Evidence: experimental ; 454 [2]

References

1. PubMed ID: 19196333
   The deep evolution of metazoan microRNAs
   "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
   "Evol Dev (2009) 11:50-68


2. PubMed ID: 21210939
   microRNA complements in deuterostomes: origin and evolution of microRNAs
   "Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M"
   "Evol Dev (2011) 13:15-27