Stem-loop spu-mir-1

Accession

MI0010186

Description

Strongylocentrotus purpuratus spu-mir-1 precursor miRNA

Literature search

2 open access papers mention spu-mir-1
(3 sentences)

Sequence

ccauaucccaugccauaacauacuucuuuagaauuccauacugaaucuccucaacucuaUGGAAUGUAAAGAAGUAUGUAUugaaacugggaccuc
.....(((((...((..(((((((((((((..((((((((.(((......)))....)))))))).)))))))))))))..))....)))))....

Structure

ccaua     -ugc  ua             ga        ---c   au 
     uccca    ca  acauacuucuuua  auuccaua    uga  c
     |||||    ||  |||||||||||||  ||||||||    |||   
     agggu    gu  UGUAUGAAGAAAU  UAAGGUau    acu  u
-cucc     caaa  UA             -G        cuca   cc 

Annotation confidence Not enough data

Genome context

gb|AAGJ06000013.1|: 7279901-7279996 [+]

Mature spu-miR-1-3p

• Accession: MIMAT0009650
• Description: Strongylocentrotus purpuratus spu-miR-1-3p mature miRNA
• Sequence: 60 - UGGAAUGUAAAGAAGUAUGUAU - 81
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19196333
   The deep evolution of metazoan microRNAs
   "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
   "Evol Dev (2009) 11:50-68